当前解析结果
SmilChr01G005746| 统一新 Gene ID | SmilChr01G005746 |
|---|---|
| 名称 | SmilChr01G005746 |
| 描述 | probable leucine-rich repeat receptor-like protein kinase At2g33170 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73548514 - 73550514 / + |
| NCBI Gene ID | LOC131012957 |
|---|---|
| GeneID | 131012957 |
| locus_tag | - |
| NCBI Name | LOC131012957 |
| 原始查询 | SmilChr01G005746 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable leucine-rich repeat receptor-like protein kinase At2g33170 |
| 产物 | probable leucine-rich repeat receptor-like protein kinase At2g33170 |
| Arabidopsis | AT2G33170 (AT2G33170)Leucine-rich repeat receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817878] identity=43.5; qcov=0.927; evalue=2.58e-33; confidence=medium |
| Rice | Os01g0170300- identity=41.4; qcov=0.948; evalue=3.04e-34; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12799 (LRR_4); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012957 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057796930.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057796930.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057796930.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796930.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796930.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73548591 |
ACG |
* |
2bp_deletion | CDS_variant | 2 | B107,C43 |
Chr1:73548594 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | C50 |
Chr1:73548594 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | C50 |
Chr1:73548597 |
T |
TG |
1bp_insertion | frameshift_variant | 2 | C6,C82 |
Chr1:73548597 |
T |
TG |
1bp_insertion | CDS_variant | 2 | C6,C82 |
Chr1:73548599 |
GC |
* |
1bp_deletion | CDS_variant | 1 | C50 |
Chr1:73548602 |
TGC |
* |
2bp_deletion | CDS_variant | 1 | C50 |
Chr1:73548661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,C22,D6 |
Chr1:73548665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,C22,D6 |
Chr1:73548684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B98,C50 |
Chr1:73550107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr1:73550140 |
A |
ATT |
2bp_insertion | frameshift_variant | 1 | B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796930.1PF12799
LRR_4 23-58 aa
PF00560
LRR_1 24-46 aa
PF00560
LRR_1 48-69 aa
PF23598
LRR_14 65-174 aa
PF00560
LRR_1 72-94 aa
PF00560
LRR_1 97-117 aa
PF00560
LRR_1 144-164 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796930.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 23 | 58 | 9.9e-16 | 58.1 | Leucine Rich repeats (2 copies) |
XP_057796930.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 24 | 46 | 2.5e-21 | 71.9 | Leucine Rich Repeat |
XP_057796930.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 48 | 69 | 2.5e-21 | 71.9 | Leucine Rich Repeat |
XP_057796930.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 65 | 174 | 1.4e-19 | 70.8 | Leucine-rich repeat region |
XP_057796930.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 72 | 94 | 2.5e-21 | 71.9 | Leucine Rich Repeat |
XP_057796930.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 117 | 2.5e-21 | 71.9 | Leucine Rich Repeat |
XP_057796930.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 164 | 2.5e-21 | 71.9 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。