当前解析结果
SmilChr01G005747| 统一新 Gene ID | SmilChr01G005747 |
|---|---|
| 名称 | SmilChr01G005747 |
| 描述 | receptor like protein 27-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73557362 - 73558285 / + |
| NCBI Gene ID | LOC131012969 |
|---|---|
| GeneID | 131012969 |
| locus_tag | - |
| NCBI Name | LOC131012969 |
| 原始查询 | SmilChr01G005747 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor like protein 27-like |
| 产物 | receptor like protein 27-like |
| Arabidopsis | AT2G33060 (RLP27)receptor like protein 27 [Source:NCBI gene (formerly Entrezgene);Acc:817868] identity=43.3; qcov=0.902; evalue=1.6e-64; confidence=medium |
| Rice | Os12g0221700- identity=42.9; qcov=0.873; evalue=4.22e-60; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012969 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796940.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796940.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796940.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796940.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796940.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73557368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B31 |
Chr1:73557388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B31 |
Chr1:73557394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,C46 |
Chr1:73557455 |
CCT |
* |
2bp_deletion | CDS_variant | 1 | C8 |
Chr1:73557467 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C8 |
Chr1:73557467 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C8 |
Chr1:73557482 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C8 |
Chr1:73557482 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C8 |
Chr1:73557529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,A3,B93,B94 |
Chr1:73557575 |
AG |
A |
1bp_deletion | frameshift_variant | 30 | A20,A24,B111,B117,B124,B128,B15,B21,B22,B28,B53,B79,B90,B92,C13,C17,C3,C33,C39,C40,C47,C52,C55,C56,C7,C79,C80,C81,D2,D5 |
Chr1:73557586 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A3,B93 |
Chr1:73557586 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A3,B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796940.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 104-124 aa
PF13516
LRR_6 125-138 aa
PF00560
LRR_1 126-147 aa
PF00560
LRR_1 151-172 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796940.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 1.5e-20 | 69.6 | Leucine Rich Repeat |
XP_057796940.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 104 | 124 | 1.5e-20 | 69.6 | Leucine Rich Repeat |
XP_057796940.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 125 | 138 | 3.2e-08 | 33.7 | Leucine Rich repeat |
XP_057796940.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 126 | 147 | 1.5e-20 | 69.6 | Leucine Rich Repeat |
XP_057796940.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 151 | 172 | 1.5e-20 | 69.6 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。