Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005756

染色体: Chr01 坐标: 73645968-73657238 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005756
名称SmilChr01G005756
描述uncharacterized SmilChr01G005756
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向73645968 - 73657238 / -

ID 对照

NCBI Gene IDLOC131005863
GeneID131005863
locus_tag-
NCBI NameLOC131005863
原始查询SmilChr01G005756

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820439]; symbol=AT3G12590; hit=AT3G12590; species=arabidopsis; confidence=high
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820439]; symbol=AT3G12590; hit=AT3G12590; species=arabidopsis; confidence=high
ArabidopsisAT3G12590 (AT3G12590)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820439]
identity=64.5; qcov=0.892; evalue=0; confidence=high
RiceOs01g0974300
-
identity=51.7; qcov=0.194; evalue=3.83e-58; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131005863

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057788947.1
2 Nucleus 细胞核 1.00000 XP_057788949.1
3 Spindle pole body Spindle pole body 0.20000 XP_057788947.1
4 Chromosome 染色体 0.00000 XP_057788949.1
5 Centromere 着丝粒 0.00000 XP_057788949.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:73648080 G A EMS_canonical_SNV CDS_variant 2 C83,D10
Chr1:73648091 C T EMS_canonical_SNV CDS_variant 1 C17
Chr1:73648870 C T EMS_canonical_SNV CDS_variant 2 B127,D10
Chr1:73649063 G A EMS_canonical_SNV CDS_variant 1 C8
Chr1:73650077 G A EMS_canonical_SNV CDS_variant 2 B42,B43
Chr1:73653330 G A EMS_canonical_SNV CDS_variant 1 C61
Chr1:73653787 C T EMS_canonical_SNV CDS_variant 2 C65,C84
Chr1:73654571 C T EMS_canonical_SNV CDS_variant 2 B46,B68
Chr1:73656207 G A EMS_canonical_SNV CDS_variant 5 B102,B63,C5,C59,C67
Chr1:73656870 G A EMS_canonical_SNV CDS_variant 3 B42,B43,C50
Chr1:73656873 C T EMS_canonical_SNV CDS_variant 1 B22
Chr1:73656915 C T EMS_canonical_SNV CDS_variant 3 B109,C56,C65

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057932965.1
AATTCTCCCAAAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATTGTTCACATTGGCCCTTGCGAGCTGCCGAGCTGTATCTTCAAGACTTCAACGGTAACTCCTCTCCTACTGTATATCACAATCGCAGCTCTCTCTCTCTAAACCTGCTTCGGAATCCGAATCGCAATCCAAATGCGTCATTTCTAGATACAGACCAACAGCAGCACACGTGATGTCGACCAGTTTCAGTCCTTCCAGAGCCCC...
XM_057932966.1
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATTGTTCACATTGGCCCTTGCGAGCTGCCGAGCTGTATCTTCAAGACTTCAACGGTAACTCCTCTCCTACTGTATATCACAATCGCAGCTCTCTCTCTCTAAACCTGCTTCGGAATCCGAATCGCAATCCAAATGCGTCATTTCTAGATACAGACCAACAGCAGCACACGTGATGTCGACCAGTTTCAGTCCTTCCAGAGCCCCCGCGATCTCCCGGATGCAATTGGGC...

CDS

3 records

下载 CDS FASTA
LOC131005863
ATGTCGACCAGTTTCAGTCCTTCCAGAGCCCCCGCGATCTCCCGGATGCAATTGGGCGCCGCCTCCATGTCCCGTCTGCGATCTTCCTCCATCAAGAAGCCGCCGGAGCCGCTCCGCCGCGCCGTCGCCGATTGCTTGTCCGCCGCCGCTCCCTCGCAGGTCGAAGCGTCCAGGACTCTGCGGGATTACATGGCGGCACAGGCCACAATTGATTTGGCATATGGCATGATTCTAGAACACACTCTTGCAGAGAGGGAACG...
LOC131005863
ATGTCGACCAGTTTCAGTCCTTCCAGAGCCCCCGCGATCTCCCGGATGCAATTGGGCGCCGCCTCCATGTCCCGTCTGCGATCTTCCTCCATCAAGAAGCCGCCGGAGCCGCTCCGCCGCGCCGTCGCCGATTGCTTGTCCGCCGCCGCTCCCTCGCAGGTCGAAGCGTCCAGGACTCTGCGGGATTACATGGCGGCACAGGCCACAATTGATTTGGCATATGGCATGATTCTAGAACACACTCTTGCAGAGAGGGAACG...

Protein

3 records

下载 Protein FASTA
XP_057788947.1
MSTSFSPSRAPAISRMQLGAASMSRLRSSSIKKPPEPLRRAVADCLSAAAPSQVEASRTLRDYMAAQATIDLAYGMILEHTLAERERSPAVVGRCVALLKRFLLRYKPSEETLLQIDRFCISIIAECDMSPHRKLLPWSRSLSQQSLNPAPSTNVNPLPVSSFASGALVKSLNYVRSLVAQYIPKRSFQPAAFAGAAPASRQSLPTLSSLLSKSFNSQLSPANAKESLESKDTSIASVSDSPITEEVDEIGNLEFMALDV...
XP_057788948.1
MSTSFSPSRAPAISRMQLGAASMSRLRSSSIKKPPEPLRRAVADCLSAAAPSQVEASRTLRDYMAAQATIDLAYGMILEHTLAERERSPAVVGRCVALLKRFLLRYKPSEETLLQIDRFCISIIAECDMSPHRKLLPWSRSLSQQSLNPAPSTNVNPLPVSSFASGALVKSLNYVRSLVAQYIPKRSFQPAAFAGAAPASRQSLPTLSSLLSKSFNSQLSPANAKESLESKDTSIASVSDSPITEEVDEIGNLEFMALDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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