当前解析结果
SmilChr01G005758| 统一新 Gene ID | SmilChr01G005758 |
|---|---|
| 名称 | SmilChr01G005758 |
| 描述 | ABC transporter B family member 20-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73661649 - 73671932 / - |
| NCBI Gene ID | LOC131005862 |
|---|---|
| GeneID | 131005862 |
| locus_tag | - |
| NCBI Name | LOC131005862 |
| 原始查询 | SmilChr01G005758 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 20-like |
| 产物 | ABC transporter B family member 20-like |
| Arabidopsis | AT3G55320 (ABCB20)P-glycoprotein 20 [Source:NCBI gene (formerly Entrezgene);Acc:824698] identity=83.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0280000 (OsABCB13)- identity=78.6; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005862 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057788946.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057788946.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057788946.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788946.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788946.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73662570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B68 |
Chr1:73662573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C61,C69 |
Chr1:73662587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr1:73662711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B13 |
Chr1:73662954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B76,D6 |
Chr1:73662958 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B76 |
Chr1:73662958 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B76 |
Chr1:73662978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr1:73663143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,A5,B12 |
Chr1:73663215 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr1:73663839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr1:73664240 |
C |
T |
EMS_canonical_SNV | stop_gained | 108 | A1,A13,A15,A18,A2,A25,A7,A8,B1,B101,B103,B105,B107,B108,B110,B111,B114,B117,B121,B122,B124,B127,B128,B13,B131,B137,B139,B19,B20,B21,B23,B24,B25,B26,B31,B32,B33,B35,B37,B38,B39,B46,B49,B53,B54,B55,B60,B61,B62,B65,B69,B71,B74,B77,B78,B81,B82,B84,B89,B9,B90,B92,B93,B94,B98,C1,C11,C12,C15,C17,C18,C2,C20,C21,C23,C25,C26,C31,C36,C4,C43,C44,C47,C48,C49,C5,C50,C51,C52,C58,C6,C60,C61,C62,C65,C69,C70,C71,C75,C76,C78,C80,C82,D1,D2,D3,D6,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788946.1PF00664
ABC_membrane 83-351 aa
PF00005
ABC_tran 422-567 aa
PF00664
ABC_membrane 834-1095 aa
PF00005
ABC_tran 1168-1316 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788946.1 |
Pfam | PF00664 |
ABC_membrane | Family | 83 | 351 | 1.8e-86 | 291.0 | ABC transporter transmembrane region |
XP_057788946.1 |
Pfam | PF00005 |
ABC_tran | Domain | 422 | 567 | 8.6e-54 | 182.6 | ABC transporter |
XP_057788946.1 |
Pfam | PF00664 |
ABC_membrane | Family | 834 | 1095 | 1.8e-86 | 291.0 | ABC transporter transmembrane region |
XP_057788946.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1168 | 1316 | 8.6e-54 | 182.6 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。