Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005763`

染色体: Chr01 坐标: 73730030-73740259 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005763`
名称	SmilChr01G005763
描述	SAC3 family protein A
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73730030 - 73740259 / `-`

ID 对照

NCBI Gene ID	`LOC131006064`
GeneID	`131006064`
locus_tag	`-`
NCBI Name	`LOC131006064`
原始查询	`SmilChr01G005763`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SAC3 family protein A
产物	SAC3 family protein A
Arabidopsis	`AT2G39340` (SAC3A) SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Source:NCBI gene (formerly Entrezgene);Acc:818519] identity=49.6; qcov=1.03; evalue=0; confidence=high
Rice	`Os01g0836400` (P0506B12.25) - identity=47.6; qcov=0.764; evalue=0; confidence=high
GO	GO:0005634 (nucleus)
KEGG	-
Pfam	PF03399 (SAC3_GANP)
InterPro	-
eggNOG	-
NR	GeneID:131006064

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057789185.1`
2	Cytoplasm	细胞质	0.40000	`XP_057789185.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057789185.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057789185.1`
5	Cytosol	细胞质基质	0.20000	`XP_057789185.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73730892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C1,C71
`Chr1:73731100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr1:73731337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,C1,C51,C60,C83
`Chr1:73731351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C60
`Chr1:73732204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B20,B40
`Chr1:73732322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr1:73732540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr1:73732590`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B99
`Chr1:73732590`	`TA`	`T`	1bp_deletion	CDS_variant	1	B99
`Chr1:73732663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:73732684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:73732690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789185.1

1058 aa

529

1058

SAC3_GANP

PF03399 SAC3_GANP 773-977 aa

XP_057789186.1

1057 aa

528

1057

SAC3_GANP

PF03399 SAC3_GANP 772-976 aa

XP_057789188.1

1051 aa

526

1051

SAC3_GANP

PF03399 SAC3_GANP 773-977 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789185.1`	Pfam	`PF03399`	SAC3_GANP	Family	773	977	1.8e-25	90.7	SAC3/GANP family
`XP_057789186.1`	Pfam	`PF03399`	SAC3_GANP	Family	772	976	1.8e-25	90.7	SAC3/GANP family
`XP_057789188.1`	Pfam	`PF03399`	SAC3_GANP	Family	773	977	1.7e-25	90.7	SAC3/GANP family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933205.1
CCCCACCCCCACCCCCACCCCCACCCACCTCCTCGCCGGCTTGTTTTTCCTGCAAACGCGGATTTGCAGATCAATTGATGCCGACATATATTCTTGATTCGCAATACCCATTCGCTAATCATTAACTCTGATTTACCAAGTCAACAAATTATCAAATTCCATTCGCGCCCAATACACTTTGCTTCACCTCTTTCAAAAAAAAAAAAGTTTTCTCTTGGCTCCGTTTGATCTCTGTGTTCGCTTTCAGCTCGAAGAGAAAC...

XM_057933203.1
CACCCCCACCCCCACCCACCTCCTCGCCGGCTTGTTTTTCCTGCAAACGCGGATTTGCAGATCAATTGATGCCGACATATATTCTTGATTCGCAATACCCATTCGCTAATCATTAACTCTGATTTACCAAGTCAACAAATTATCAAATTCCATTCGCGCCCAATACACTTTGCTTCACCTCTTTCAAAAAAAAAAAAGTTTTCTCTTGGCTCCGTTTGATCTCTGTGTTCGCTTTCAGCTCGAAGAGAAACACGTGTTCC...

CDS

3 records

下载 CDS FASTA

LOC131006064
ATGATGAACCAAGGAGAAAACACGGAAACTGTTGCTCCTGTTGAGAAGAATCAAACAATTGATCAGCCCCAAGCTCCTACATCTTATTTCTCTCCTAACTGTGCTGTTGCATCATGGACTGCACAAGAGGAGAATCATAACTTGAGGGAGAATGGAGCTGTCTCTAATTCTGGCTACAGTCATGATCAACCACTGGAGGCGGCCGTGGATAATGTTCAAGATGGAGCAAATATGGTGTCTAGTGTCTCGACATCAAGTTC...

LOC131006064
ATGATGAACCAAGGAGAAAACACGGAAACTGTTGCTCCTGTTGAGAATCAAACAATTGATCAGCCCCAAGCTCCTACATCTTATTTCTCTCCTAACTGTGCTGTTGCATCATGGACTGCACAAGAGGAGAATCATAACTTGAGGGAGAATGGAGCTGTCTCTAATTCTGGCTACAGTCATGATCAACCACTGGAGGCGGCCGTGGATAATGTTCAAGATGGAGCAAATATGGTGTCTAGTGTCTCGACATCAAGTTCAGG...

Protein

3 records

下载 Protein FASTA

XP_057789185.1
MMNQGENTETVAPVEKNQTIDQPQAPTSYFSPNCAVASWTAQEENHNLRENGAVSNSGYSHDQPLEAAVDNVQDGANMVSSVSTSSSGSTNVAQGYSGYATYPNADPYGYNSPGYAAYYNQYQQQSSQYQQQPNQYQQQPSQYQQQPNQYQQQPDQYQQQSSQYQPQTNQYQQQPNQSYPHHIGAYQNTGAPHQPLSSFQNTGSYAGPASYSSTYYNPGDYQTSGSYTSGTYGTQTNLWQGGQYASYGSHQYPNYSQDSN...

XP_057789186.1
MMNQGENTETVAPVENQTIDQPQAPTSYFSPNCAVASWTAQEENHNLRENGAVSNSGYSHDQPLEAAVDNVQDGANMVSSVSTSSSGSTNVAQGYSGYATYPNADPYGYNSPGYAAYYNQYQQQSSQYQQQPNQYQQQPSQYQQQPNQYQQQPDQYQQQSSQYQPQTNQYQQQPNQSYPHHIGAYQNTGAPHQPLSSFQNTGSYAGPASYSSTYYNPGDYQTSGSYTSGTYGTQTNLWQGGQYASYGSHQYPNYSQDSNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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