Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005774`

染色体: Chr01 坐标: 73815341-73819678 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005774`
名称	SmilChr01G005774
描述	probable inactive purple acid phosphatase 16
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73815341 - 73819678 / `+`

ID 对照

NCBI Gene ID	`LOC131006078`
GeneID	`131006078`
locus_tag	`-`
NCBI Name	`LOC131006078`
原始查询	`SmilChr01G005774`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive purple acid phosphatase 16
产物	probable inactive purple acid phosphatase 16
Arabidopsis	`AT3G10150` (PAP16) purple acid phosphatase 16 [Source:NCBI gene (formerly Entrezgene);Acc:820178] identity=68; qcov=0.99; evalue=5.59e-158; confidence=high
Rice	`Os01g0941800` (P0432C03.25-1) - identity=66.8; qcov=1; evalue=4.85e-157; confidence=high
GO	GO:0005737 (cytoplasm); GO:0016788 (hydrolase activity, acting on ester bonds)
KEGG	-
Pfam	PF00149 (Metallophos)
InterPro	-
eggNOG	-
NR	GeneID:131006078

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057789205.1`
2	Cell wall	细胞壁	0.20000	`XP_057789205.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057789206.1`
4	Nucleus	细胞核	0.00000	`XP_057789206.1`
5	Chromosome	染色体	0.00000	`XP_057789206.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73815860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,B27,C47
`Chr1:73815870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:73815919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B1,B36
`Chr1:73816809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B133,C39,C77
`Chr1:73816815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B102,C54
`Chr1:73816821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr1:73818457`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C81
`Chr1:73818457`	`AC`	`A`	1bp_deletion	CDS_variant	1	C81
`Chr1:73818491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:73818581`	`G`	`A`	EMS_canonical_SNV	stop_gained	29	A1,A9,B112,B114,B125,B131,B140,B18,B19,B2,B24,B32,B38,B42,B43,B44,B70,B86,B92,B93,C12,C16,C25,C26,C37,C58,C6,C8,D3
`Chr1:73818618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B71,C19,C56,C62
`Chr1:73818630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789205.1

367 aa

184

367

Metallophos

PF00149 Metallophos 37-305 aa

XP_057789206.1

306 aa

153

306

Metallophos

PF00149 Metallophos 9-244 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789205.1`	Pfam	`PF00149`	Metallophos	Domain	37	305	6.7e-11	43.7	Calcineurin-like phosphoesterase
`XP_057789206.1`	Pfam	`PF00149`	Metallophos	Domain	9	244	2.7e-08	35.2	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933222.1
TCTTTTGCACAAAGCGTTAGAAATCAAATAGGATTTTCACATAAAAGAAATAGAGGGAGATAGGGCCTTTGGGTAGATGGCGGCGCCGCTACTGGAGAAAAGGAGAGAGACCGGAGATGAGGCGGCTGGCGTCAGGTCGCCGGAGCAGAGGAGGAGGCGGCGTCGGCGCTCCTCGCCGATGGCGTCTGACCGATAGAGAGAGAGAGATCGAGGGGAGAAAGGAGGCGCCGGCAGCAGGAACTGTGATGTAGAGAGGGGGA...

XM_057933223.1
TGATTGCTGCTTTTGTTTGTGTCTTGAGTGTTTCTTTCCATGGATGGAGCTGCCATTCCAAGGCGCAGTGTTTACTGAATGAATTGGAATGAAGAAAGCATAATTAAGTTCCATAATTTGTTTGAACGATTCATTTCTTGTAATGGAAAATAATGGTGATATTGATTTTATGTAAATGGCAGACTTTGTTATGTCTGCTGTGCTAGACGATGAGCATCCAGACTTTGTGATTTATCTTGGAGATGTGATCACGGCCAACA...

CDS

2 records

下载 CDS FASTA

LOC131006078
ATGCCGAGGAAGTTGACTCTCATCTATCTCTCGCTGATCATCGCCGTCGGAGCCGCGCGGCTACGCACGACGCCGGAGGACAACCTCCGGATGCGAGATGGCGCAGCTTTCAGGATCGCGCTCTTCGCCGACCTGCACTTCGGCGAGGACGCCTGGACCGAGTGGGGCCCCACGCAGGACTTGAACTCTGTGGGGGTTATGTCTGCTGTGCTAGACGATGAGCATCCAGACTTTGTGATTTATCTTGGAGATGTGATCAC...

LOC131006078
ATGGCAGACTTTGTTATGTCTGCTGTGCTAGACGATGAGCATCCAGACTTTGTGATTTATCTTGGAGATGTGATCACGGCCAACAATATAATGGTAGAAAATGCGAGCTCGTATTGGGATCAAGCTGTGTCGCCAACGAGGGCGAGGGGGATACCGTGGTCTACCATATTTGGGAACCATGATGATGCCCCGTTTGAGTGGCCGTTGGAGTGGTTTTCAGAGACCGGGATTCCTCAGATCTGTTGCCCGGCTGCAAATGC...

Protein

2 records

下载 Protein FASTA

XP_057789205.1
MPRKLTLIYLSLIIAVGAARLRTTPEDNLRMRDGAAFRIALFADLHFGEDAWTEWGPTQDLNSVGVMSAVLDDEHPDFVIYLGDVITANNIMVENASSYWDQAVSPTRARGIPWSTIFGNHDDAPFEWPLEWFSETGIPQICCPAANASFAECSFRGTTRLELMKSEMERNTLSLSNGGPRDLWPSVSNYVLKLSSASNAQEPVAFMYFLDSGGGSYPEIISHAQVKWFEEKSQEINPHSRVPEIIFWHVPSKAYKKVAP...

XP_057789206.1
MADFVMSAVLDDEHPDFVIYLGDVITANNIMVENASSYWDQAVSPTRARGIPWSTIFGNHDDAPFEWPLEWFSETGIPQICCPAANASFAECSFRGTTRLELMKSEMERNTLSLSNGGPRDLWPSVSNYVLKLSSASNAQEPVAFMYFLDSGGGSYPEIISHAQVKWFEEKSQEINPHSRVPEIIFWHVPSKAYKKVAPKLSRGAQCVGSIFGERVAAQEAEMGMMRVLEKRASVKVVFVGHNHGLDWCCPYKKMWLCFA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器