当前解析结果
SmilChr01G005776| 统一新 Gene ID | SmilChr01G005776 |
|---|---|
| 名称 | SmilChr01G005776 |
| 描述 | uncharacterized SmilChr01G005776 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73849965 - 73871263 / - |
| NCBI Gene ID | LOC131006083 |
|---|---|
| GeneID | 131006083 |
| locus_tag | - |
| NCBI Name | LOC131006083 |
| 原始查询 | SmilChr01G005776 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exportin-4 protein [Source:NCBI gene (formerly Entrezgene);Acc:819605]; symbol=AT3G04490; hit=AT3G04490; species=arabidopsis; confidence=high |
| 产物 | exportin-4 protein [Source:NCBI gene (formerly Entrezgene);Acc:819605]; symbol=AT3G04490; hit=AT3G04490; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G04490 (AT3G04490)exportin-4 protein [Source:NCBI gene (formerly Entrezgene);Acc:819605] identity=64.3; qcov=0.996; evalue=0; confidence=high |
| Rice | Os10g0477000- identity=51.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005049 (nuclear export signal receptor activity); GO:0005643 (nuclear pore); GO:0005737 (cytoplasm); GO:0006611 (protein export from nucleus) |
| KEGG | smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF28490 (XPO4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006083 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789209.1 |
| 2 | Nucleus membrane | 核膜 | 0.60000 | XP_057789209.1 |
| 3 | Nuclear pore complex | 核孔复合体 | 0.20000 | XP_057789209.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057789209.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789209.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73850206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B37,C22 |
Chr1:73850232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C15,C56,C65,D7 |
Chr1:73850327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:73850336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:73850614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr1:73850631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr1:73850775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:73850807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:73850809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr1:73850820 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,B13 |
Chr1:73850838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:73850879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789209.1PF28490
XPO4 22-1157 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789209.1 |
Pfam | PF28490 |
XPO4 | Repeat | 22 | 1157 | 7e-79 | 266.8 | Exportin-4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。