当前解析结果
SmilChr01G005777| 统一新 Gene ID | SmilChr01G005777 |
|---|---|
| 名称 | SmilChr01G005777 |
| 描述 | phosphoenolpyruvate carboxylase kinase 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73883881 - 73885272 / + |
| NCBI Gene ID | LOC131006084 |
|---|---|
| GeneID | 131006084 |
| locus_tag | - |
| NCBI Name | LOC131006084 |
| 原始查询 | SmilChr01G005777 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoenolpyruvate carboxylase kinase 2-like |
| 产物 | phosphoenolpyruvate carboxylase kinase 2-like |
| Arabidopsis | AT1G08650 (PPCK1)phosphoenolpyruvate carboxylase kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837387] identity=58.6; qcov=0.96; evalue=4.17e-110; confidence=high |
| Rice | Os02g0807000 (OsPPCK1)- identity=55.5; qcov=1.02; evalue=6.82e-106; confidence=high |
| GO | GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006084 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789210.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057789210.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057789210.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789210.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789210.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73883986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:73884114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:73884130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr1:73884275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:73884411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr1:73884435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C5,C58,C60 |
Chr1:73884465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,C38 |
Chr1:73884468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,D8 |
Chr1:73884477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,C38 |
Chr1:73884499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C39 |
Chr1:73884518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B13,B33,B7,C39,D10 |
Chr1:73884546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789210.1PF00069
Pkinase 9-264 aa
PF07714
PK_Tyr_Ser-Thr 10-259 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789210.1 |
Pfam | PF00069 |
Pkinase | Domain | 9 | 264 | 1.8e-77 | 261.0 | Protein kinase domain |
XP_057789210.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 10 | 259 | 3.9e-31 | 109.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。