当前解析结果
SmilChr01G005778| 统一新 Gene ID | SmilChr01G005778 |
|---|---|
| 名称 | SmilChr01G005778 |
| 描述 | uncharacterized SmilChr01G005778 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73900013 - 73902446 / + |
| NCBI Gene ID | LOC131006085 |
|---|---|
| GeneID | 131006085 |
| locus_tag | - |
| NCBI Name | LOC131006085 |
| 原始查询 | SmilChr01G005778 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831458]; symbol=AT5G16010; hit=AT5G16010; species=arabidopsis; confidence=high |
| 产物 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831458]; symbol=AT5G16010; hit=AT5G16010; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G16010 (AT5G16010)3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831458] identity=54.8; qcov=0.832; evalue=9.63e-103; confidence=high |
| Rice | Os07g0162100 (OJ1714_H10.144)- identity=48.2; qcov=0.788; evalue=5.53e-71; confidence=high |
| GO | GO:0006629 (lipid metabolic process); GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors) |
| KEGG | - |
| Pfam | PF02544 (Steroid_dh); PF06966 (DUF1295) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006085 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057789211.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057789211.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789211.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789211.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789211.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73900114 |
G |
GA |
1bp_insertion | frameshift_variant | 84 | A10,A14,A16,A2,A20,A23,A5,B113,B115,B118,B121,B13,B131,B133,B138,B15,B2,B20,B22,B23,B28,B29,B30,B34,B37,B39,B4,B40,B41,B42,B43,B45,B46,B5,B50,B53,B56,B57,B58,B59,B63,B64,B68,B69,B72,B77,B79,B81,B89,B9,B94,B96,B98,C1,C14,C16,C18,C21,C24,C27,C31,C33,C34,C37,C39,C42,C43,C44,C45,C46,C48,C50,C53,C55,C57,C6,C62,C71,C72,C73,C75,C81,C83,C84 |
Chr1:73900160 |
A |
ACT |
2bp_insertion | frameshift_variant | 36 | A10,A14,A2,A5,B14,B15,B2,B23,B28,B4,B40,B42,B43,B46,B50,B53,B64,B68,B81,B9,B94,C14,C16,C18,C21,C27,C42,C43,C44,C45,C48,C53,C57,C71,C79,C84 |
Chr1:73900194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,B56,B59,B79,B9 |
Chr1:73900211 |
A |
AT |
1bp_insertion | frameshift_variant | 26 | A14,A24,A6,B12,B132,B134,B14,B17,B18,B26,B6,B62,B73,B75,B8,C3,C39,C4,C40,C54,C56,C63,C67,C76,D3,D8 |
Chr1:73900285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,C40,D6 |
Chr1:73900302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr1:73900332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,C46 |
Chr1:73900402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C75 |
Chr1:73900408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B60,C65,D6 |
Chr1:73900417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:73900494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr1:73900546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789211.1PF06966
DUF1295 182-275 aa
PF02544
Steroid_dh 206-316 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789211.1 |
Pfam | PF06966 |
DUF1295 | Family | 182 | 275 | 6.6e-05 | 23.2 | Protein of unknown function (DUF1295) |
XP_057789211.1 |
Pfam | PF02544 |
Steroid_dh | Family | 206 | 316 | 1.1e-25 | 91.1 | 3-oxo-5-alpha-steroid 4-dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。