Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005792`

染色体: Chr01 坐标: 74016683-74025384 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005792`
名称	SmilChr01G005792
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74016683 - 74025384 / `+`

ID 对照

NCBI Gene ID	`LOC131006100`
GeneID	`131006100`
locus_tag	`-`
NCBI Name	`LOC131006100`
原始查询	`SmilChr01G005792`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=26; qcov=0.731; evalue=1.11e-35; confidence=low
Rice	`Os08g0424700` (P0456B03.103) - identity=24.3; qcov=0.808; evalue=3.86e-35; confidence=weak
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC)
InterPro	-
eggNOG	-
NR	GeneID:131006100

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057789230.1`
2	Cytosol	细胞质基质	0.40000	`XP_057789230.1`
3	Cytoplasm	细胞质	0.20000	`XP_057789230.1`
4	Nucleus	细胞核	0.00000	`XP_057789230.1`
5	Chromosome	染色体	0.00000	`XP_057789230.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74016803`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B104,B70,C33,D4
`Chr1:74016851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr1:74016856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:74016913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B101,C30,D5
`Chr1:74016951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,C30,D5
`Chr1:74017106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C14,C48,C5,C85
`Chr1:74017133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr1:74017217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr1:74017228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr1:74017300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C4
`Chr1:74017320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr1:74017338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,C31,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789230.1

927 aa

464

927

NB-ARC

PF00931 NB-ARC 203-362 aa

XP_057789231.1

927 aa

464

927

NB-ARC

PF00931 NB-ARC 203-362 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789230.1`	Pfam	`PF00931`	NB-ARC	Domain	203	362	9.3e-28	97.7	NB-ARC domain
`XP_057789231.1`	Pfam	`PF00931`	NB-ARC	Domain	203	362	9.3e-28	97.7	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933248.1
AATTCTTTTTCAAATTTTCACCATTACCAACTCTTCCGACTTCACTCCCGCCGCCGCCGCCGCCGGAAACAGAGAGAAATGACGGCATTTGGTGCAGTGATTTCTCTGAGGAATACAATTGATTTCATTCTCCATTCTTCTCATTTCAGCCTCATTGAGCCCTCGCCACATATCATACAACTCGTCTACGAGGAGTTGGATCCATTGCAAGAAATTCTGTACACGTTGGACGACACAAGCAAAAGCAAGAGCAGGAAGAA...

XM_057933247.1
AATTCTTTTTCAAATTTTCACCATTACCAACTCTTCCGACTTCACTCCCGCCGCCGCCGCCGCCGGAAACAGAGAGAAATGACGGCATTTGGTGCAGTGATTTCTCTGAGGAATACAATTGATTTCATTCTCCATTCTTCTCATTTCAGCCTCATTGAGCCCTCGCCACATATCATACAACTCGTCTACGAGGAGTTGGATCCATTGCAAGAAATTCTGTACACGTTGGACGACACAAGCAAAAGCAAGAGCAGGAAGAA...

CDS

2 records

下载 CDS FASTA

LOC131006100
ATGACGGCATTTGGTGCAGTGATTTCTCTGAGGAATACAATTGATTTCATTCTCCATTCTTCTCATTTCAGCCTCATTGAGCCCTCGCCACATATCATACAACTCGTCTACGAGGAGTTGGATCCATTGCAAGAAATTCTGTACACGTTGGACGACACAAGCAAAAGCAAGAGCAGGAAGAAGGTGAATGCTTTGGATGGAAGAATCAAAGATTTGATTTGGGAATTTGAAGACTTATTGGTATACCTTCTCCACCAACA...

Protein

2 records

下载 Protein FASTA

XP_057789230.1
MTAFGAVISLRNTIDFILHSSHFSLIEPSPHIIQLVYEELDPLQEILYTLDDTSKSKSRKKVNALDGRIKDLIWEFEDLLVYLLHQQIHSKFHAVQIDEEMKERVWEFQRSMGFQGLMESLPSQPKGSKNTPRFYIDLQFLQHDVSSFIERLEDLEEEYIYEVDNMPEDEDEDDDDQSISTRSGTKSKMIGLSDQFQQLKQILVDRKMESYDKKKCVVLVGTAGVGKTALAEAVFEDPEVMSRFEHRVWVRVGRKSQFDH...

XP_057789231.1
MTAFGAVISLRNTIDFILHSSHFSLIEPSPHIIQLVYEELDPLQEILYTLDDTSKSKSRKKVNALDGRIKDLIWEFEDLLVYLLHQQIHSKFHAVQIDEEMKERVWEFQRSMGFQGLMESLPSQPKGSKNTPRFYIDLQFLQHDVSSFIERLEDLEEEYIYEVDNMPEDEDEDDDDQSISTRSGTKSKMIGLSDQFQQLKQILVDRKMESYDKKKCVVLVGTAGVGKTALAEAVFEDPEVMSRFEHRVWVRVGRKSQFDH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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