当前解析结果
SmilChr01G005797| 统一新 Gene ID | SmilChr01G005797 |
|---|---|
| 名称 | SmilChr01G005797 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74049439 - 74053234 / + |
| NCBI Gene ID | LOC131006104 |
|---|---|
| GeneID | 131006104 |
| locus_tag | - |
| NCBI Name | LOC131006104 |
| 原始查询 | SmilChr01G005797 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=24.4; qcov=0.841; evalue=2.38e-37; confidence=weak |
| Rice | Os07g0186500- identity=25.5; qcov=0.741; evalue=1.33e-37; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006104 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057789235.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057789235.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057789235.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057789235.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74049697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C15 |
Chr1:74049732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C27,C51 |
Chr1:74049740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B49,C81,C86 |
Chr1:74049760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C7 |
Chr1:74049764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B32,B7,C8 |
Chr1:74049769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr1:74049787 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C7 |
Chr1:74049787 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C7 |
Chr1:74049798 |
GGA |
G |
2bp_deletion | frameshift_variant | 14 | A20,A4,B101,B123,B14,B45,B72,B73,C30,C34,D10,D5,D7,D8 |
Chr1:74049820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,A7,B32,B67 |
Chr1:74049845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:74049852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789235.1PF00931
NB-ARC 217-371 aa
PF23598
LRR_14 617-875 aa
XP_057789236.1PF00931
NB-ARC 217-371 aa
PF23598
LRR_14 617-875 aa
XP_057789237.1PF00931
NB-ARC 217-371 aa
PF23598
LRR_14 617-875 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789235.1 |
Pfam | PF00931 |
NB-ARC | Domain | 217 | 371 | 2.9e-25 | 89.5 | NB-ARC domain |
XP_057789235.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 617 | 875 | 3.8e-12 | 46.4 | Leucine-rich repeat region |
XP_057789236.1 |
Pfam | PF00931 |
NB-ARC | Domain | 217 | 371 | 2.9e-25 | 89.5 | NB-ARC domain |
XP_057789236.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 617 | 875 | 3.8e-12 | 46.4 | Leucine-rich repeat region |
XP_057789237.1 |
Pfam | PF00931 |
NB-ARC | Domain | 217 | 371 | 2.9e-25 | 89.5 | NB-ARC domain |
XP_057789237.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 617 | 875 | 3.8e-12 | 46.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。