Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005800`

染色体: Chr01 坐标: 74074039-74077240 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005800`
名称	SmilChr01G005800
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74074039 - 74077240 / `+`

ID 对照

NCBI Gene ID	`LOC131006107`
GeneID	`131006107`
locus_tag	`-`
NCBI Name	`LOC131006107`
原始查询	`SmilChr01G005800`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=31.6; qcov=0.488; evalue=7.36e-18; confidence=low
Rice	`Os02g0301800` (P0477B05.2-1) - identity=23.1; qcov=0.972; evalue=2.97e-20; confidence=weak
GO	GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0043531 (ADP binding); GO:0050832 (defense response to fungus)
KEGG	-
Pfam	PF00931 (NB-ARC)
InterPro	-
eggNOG	-
NR	GeneID:131006107

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789239.1`
2	Cell membrane	细胞膜	0.80000	`XP_057789240.1`
3	Cytosol	细胞质基质	0.40000	`XP_057789238.1`
4	Nucleus	细胞核	0.40000	`XP_057789239.1`
5	Chromosome	染色体	0.00000	`XP_057789239.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74074170`	`CT`	`C`	1bp_deletion	frameshift_variant	7	B103,B28,B35,B56,B65,B96,C20
`Chr1:74074225`	`CGG`	`C`	2bp_deletion	frameshift_variant	15	A16,A21,A4,B12,B136,B25,B36,B58,C13,C23,C30,C42,C43,C70,D3
`Chr1:74074228`	`C`	`CTT`	2bp_insertion	frameshift_variant	15	A16,A21,A4,B12,B136,B25,B36,B58,C13,C23,C30,C42,C43,C70,D3
`Chr1:74074258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr1:74074270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:74074350`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B20
`Chr1:74074350`	`TC`	`T`	1bp_deletion	CDS_variant	1	B20
`Chr1:74074384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:74074399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A24,C40
`Chr1:74074414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:74074419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:74074515`	`T`	`TA`	1bp_insertion	frameshift_variant	10	A20,A21,C47,C49,C60,C61,C72,C8,C82,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789238.1

919 aa

460

919

NB-ARC

PF00931 NB-ARC 195-345 aa

XP_057789240.1

453 aa

226

453

NB-ARC

PF00931 NB-ARC 195-345 aa

XP_057789242.1

447 aa

224

447

NB-ARC

PF00931 NB-ARC 195-345 aa

XP_057789243.1

428 aa

214

428

NB-ARC

PF00931 NB-ARC 194-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789238.1`	Pfam	`PF00931`	NB-ARC	Domain	195	345	6.7e-22	78.6	NB-ARC domain
`XP_057789240.1`	Pfam	`PF00931`	NB-ARC	Domain	195	345	2.1e-22	80.2	NB-ARC domain
`XP_057789242.1`	Pfam	`PF00931`	NB-ARC	Domain	195	345	1.9e-22	80.4	NB-ARC domain
`XP_057789243.1`	Pfam	`PF00931`	NB-ARC	Domain	194	345	1.7e-22	80.5	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057933255.1
GACCATTGCCAAACTATTCCGACTTCATTTCTCCCTCAAAAAAAGAAAAAAGCTCTTCCGACTTCATTCCTTCCTCCACCGCCGCCGCCGCCGCCGCCAGAGAGGAATGACGGCTTATGGTGCATTGAATTCTTTGAGAAATACAATTGATTATATTCTCCATTCTTTTCATTTTAGCCTTGTTCACGGCTCTCGAAGCATCATAAACTTTGCCTACGAGGAGTTGCAGCCGTTGCAAGAAATTCTTGAAAAATTGGACA...

XM_057933259.1
TTGCCAAACTATTCCGACTTCATTTCTCCCTCAAAAAAAGAAAAAAGCTCTTCCGACTTCATTCCTTCCTCCACCGCCGCCGCCGCCGCCGCCAGAGAGGAATGACGGCTTATGGTGCATTGAATTCTTTGAGAAATACAATTGATTATATTCTCCATTCTTTTCATTTTAGCCTTGTTCACGGCTCTCGAAGCATCATAAACTTTGCCTACGAGGAGTTGCAGCCGTTGCAAGAAATTCTTGAAAAATTGGACAGCACG...

CDS

5 records

下载 CDS FASTA

LOC131006107
ATGACGGCTTATGGTGCATTGAATTCTTTGAGAAATACAATTGATTATATTCTCCATTCTTTTCATTTTAGCCTTGTTCACGGCTCTCGAAGCATCATAAACTTTGCCTACGAGGAGTTGCAGCCGTTGCAAGAAATTCTTGAAAAATTGGACAGCACGAGGACAAGCAAAAGCAGGAAGAAGGTGAATGGTTTGGATGGAATAATCAGAGAGTTGATTTGGGAATTCCAACACTTGCTGGAATCCCTTCTCTCGCAACA...

Protein

5 records

下载 Protein FASTA

XP_057789238.1
MTAYGALNSLRNTIDYILHSFHFSLVHGSRSIINFAYEELQPLQEILEKLDSTRTSKSRKKVNGLDGIIRELIWEFQHLLESLLSQQILSQADQVYDEMKERVCEFQGERIRFSIDLQFLQHHVGSLMERLKDLEEEYIYEVDNMPEDEDEDDDEQSIVSSRSETKSKMIGLSDQVQQLKVDIMEGYGRISNGSTIVVGAAGIGKTALAEAVFEDPEILSHIEHRAWVRVGRKSQFDEVSRGILAQMFGITQGDGELGAY...

XP_057789239.1
MYIMRYQRNLALFNRRSIFTFPWSVPFREFKTCRLHSSWRYVCRVEAQKKKFYHILKKLVEGLEDGVKGQHCLCLENNLLFSIKEFRQSVRLKCATSTHSLLFFGAYHQYPIPIGDDFKLLGKLDALNLRLYTFPSEILTLVLFSFLFFFLILTLVLLKYLALTCNGELPTTISKLFNLQVLIIHPHNNIRICRVPSYVPIQIWDMKELKHIEILGKSLVAPCRPASLEKLSTLVGVNANICTILEFSRKVPWITKLGVQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器