Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005801

染色体: Chr01 坐标: 74087947-74093377 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005801
名称SmilChr01G005801
描述glutathione synthetase, chloroplastic
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向74087947 - 74093377 / +

ID 对照

NCBI Gene IDLOC131006109
GeneID131006109
locus_tag-
NCBI NameLOC131006109
原始查询SmilChr01G005801

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glutathione synthetase, chloroplastic
产物glutathione synthetase%2C chloroplastic
ArabidopsisAT5G27380 (GSH2)
glutathione synthetase 2 [Source:NCBI gene (formerly Entrezgene);Acc:832797]
identity=68.8; qcov=0.917; evalue=0; confidence=high
RiceOs12g0528400 (OsGS3)
-
identity=67.5; qcov=0.857; evalue=0; confidence=high
GOGO:0004363 (glutathione synthase activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006750 (glutathione biosynthetic process); GO:0043295 (glutathione binding)
KEGGsmil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
PfamPF03199 (GSH_synthase); PF03917 (GSH_synth_ATP)
InterPro-
eggNOG-
NRGeneID:131006109

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057789245.1
2 Cytoplasm 细胞质 0.40000 XP_057789245.1
3 Chloroplast 叶绿体 0.20000 XP_057789245.1
4 Nucleus 细胞核 0.00000 XP_057789245.1
5 Chromosome 染色体 0.00000 XP_057789245.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:74088225 C T EMS_canonical_SNV CDS_variant 4 B139,C11,C69,D3
Chr1:74088239 C T EMS_canonical_SNV CDS_variant 5 B126,B128,B42,B43,C14
Chr1:74088255 G A EMS_canonical_SNV CDS_variant 2 C30,D5
Chr1:74089147 C T EMS_canonical_SNV CDS_variant 1 A5
Chr1:74089256 C T EMS_canonical_SNV CDS_variant 5 A5,B33,B9,C19,C60
Chr1:74089674 G A EMS_canonical_SNV CDS_variant 4 B140,C2,C5,C8
Chr1:74089685 C T EMS_canonical_SNV CDS_variant 1 B113
Chr1:74090038 G A EMS_canonical_SNV CDS_variant 1 A14
Chr1:74090054 C T EMS_canonical_SNV CDS_variant 1 B50
Chr1:74090057 G A EMS_canonical_SNV CDS_variant 4 B113,B131,C26,C65
Chr1:74090091 C T EMS_canonical_SNV CDS_variant 1 B75
Chr1:74091160 C T EMS_canonical_SNV CDS_variant 5 B66,B74,B91,C51,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057789245.1
531 aa
N
1
266
531
GSH_synth_ATP
GSH_synthase
C
PF03917 GSH_synth_ATP 71-530 aa PF03199 GSH_synthase 263-363 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789245.1 Pfam PF03917 GSH_synth_ATP Domain 71 530 2.2e-128 428.9 Eukaryotic glutathione synthase, ATP binding domain
XP_057789245.1 Pfam PF03199 GSH_synthase Domain 263 363 1.1e-34 119.8 Eukaryotic glutathione synthase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057933262.1
TGCACTTTTTTTTGACTGGAAATCTTTGAGTGGTAAAGGTGTGAAGGCTTTTCTGTTACTGAACTCAATTTTGCTTCCAACTAAACAGCACTGGTCCACAGTAGTCAATAGTCATCACCACTCAATGAGAAATTGACATCAAATTCATCAACCATTTTCTCAATTATGCTAAAGCAGTTTCAGGTTTTGGGAGTGGAGGAAAGTGTCTGCTTCTCGAATTGCTCCCAACAGAAACGAAGGAGATCTCGAGCTCACAATTC...

CDS

1 records

下载 CDS FASTA
LOC131006109
ATGCTAAAGCAGTTTCAGGTTTTGGGAGTGGAGGAAAGTGTCTGCTTCTCGAATTGCTCCCAACAGAAACGAAGGAGATCTCGAGCTCACAATTCGAAGCCCTGCAATATTCCCATGGCCCAGAATGCTTCTTCACCGCTTCCGCCATTGAAGTGCGAAGCCAAGCCCCAAAACCCCGTGTTTGATCCTCACGGTTTAGACCCTAATCTGCTGCAGAGAATCGCGTATGATGCTCTGGTTTGGAGCTCTCTTCGCGGGCT...

Protein

1 records

下载 Protein FASTA
XP_057789245.1
MLKQFQVLGVEESVCFSNCSQQKRRRSRAHNSKPCNIPMAQNASSPLPPLKCEAKPQNPVFDPHGLDPNLLQRIAYDALVWSSLRGLLVGDRASQKSGTVPGVGLVHAPISLLPMPFPESHWKQACEVAPIFNELVDRVSLDSKFIQDSLSRTKKVDAFTSRLLDIHAKMLDMNKKEDIRLGLHRSDYMLDGQTNLLLQIELNTISSSFPGLSCLVSDLHRSLLHQFKQHLVLDPERIPKNDSANQFVEALHKAWSEYNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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