Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005805`

染色体: Chr01 坐标: 74105749-74106857 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005805`
名称	SmilChr01G005805
描述	putative RING-H2 finger protein ATL71
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74105749 - 74106857 / `+`

ID 对照

NCBI Gene ID	`LOC131006114`
GeneID	`131006114`
locus_tag	`-`
NCBI Name	`LOC131006114`
原始查询	`SmilChr01G005805`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative RING-H2 finger protein ATL71
产物	putative RING-H2 finger protein ATL71
Arabidopsis	`AT5G06490` (AT5G06490) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830537] identity=33; qcov=0.879; evalue=1.6e-33; confidence=low
Rice	`Os02g0572200` - identity=46.9; qcov=0.473; evalue=3.76e-24; confidence=medium
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131006114

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789253.1`
2	Vacuole	液泡	0.40000	`XP_057789253.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057789253.1`
4	Nucleus	细胞核	0.00000	`XP_057789253.1`
5	Chromosome	染色体	0.00000	`XP_057789253.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74106109`	`T`	`TGA`	2bp_insertion	frameshift_variant	94	A13,A14,A19,A20,A23,A3,A7,A8,B1,B10,B102,B103,B105,B107,B11,B112,B113,B119,B120,B121,B125,B127,B133,B135,B138,B14,B19,B21,B22,B26,B3,B34,B39,B41,B44,B45,B46,B49,B52,B54,B58,B60,B62,B63,B64,B65,B7,B72,B75,B77,B83,B84,B85,B87,B89,B90,B92,B99,C11,C19,C20,C21,C25,C26,C27,C28,C32,C34,C36,C38,C39,C40,C45,C46,C47,C50,C52,C56,C57,C60,C64,C68,C69,C71,C72,C73,C77,C78,C80,C82,C83,C86,D10,D9
`Chr1:74106166`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B105,B133,B97,C29,D6
`Chr1:74106166`	`TC`	`T`	1bp_deletion	CDS_variant	5	B105,B133,B97,C29,D6
`Chr1:74106174`	`AG`	`A`	1bp_deletion	frameshift_variant	66	A14,A16,A20,A5,A6,B102,B11,B110,B113,B119,B127,B136,B16,B19,B24,B26,B3,B31,B32,B33,B37,B39,B45,B46,B49,B63,B64,B65,B66,B67,B69,B72,B73,B75,B8,B80,B81,B82,B95,B97,B99,C1,C15,C19,C29,C34,C37,C39,C41,C43,C46,C47,C49,C52,C54,C59,C68,C7,C70,C72,C73,C78,C82,C9,D3,D9
`Chr1:74106185`	`A`	`AAG`	2bp_insertion	frameshift_variant	10	A21,B108,B12,B126,B55,B61,C17,C48,C53,C63
`Chr1:74106187`	`A`	`AG`	1bp_insertion	frameshift_variant	1	C35
`Chr1:74106187`	`A`	`AG`	1bp_insertion	CDS_variant	1	C35
`Chr1:74106192`	`AAC`	`*`	2bp_deletion	CDS_variant	2	B100,B104
`Chr1:74106193`	`AC`	`A`	1bp_deletion	frameshift_variant	15	B121,B129,B131,B20,B57,B78,B85,C25,C36,C56,C6,C65,C75,C81,C83
`Chr1:74106197`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	C51
`Chr1:74106197`	`CTT`	`C`	2bp_deletion	CDS_variant	1	C51
`Chr1:74106290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789253.1

207 aa

104

207

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

zf-rbx1

PF17123 zf-RING_11 142-170 aa PF13445 zf-RING_UBOX 142-174 aa PF00097 zf-C3HC4 142-183 aa PF13923 zf-C3HC4_2 142-183 aa PF13639 zf-RING_2 142-184 aa PF12678 zf-rbx1 154-184 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789253.1`	Pfam	`PF17123`	zf-RING_11	Domain	142	170	3.3e-11	43.4	RING-like zinc finger
`XP_057789253.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	142	174	9.3e-07	29.5	RING-type zinc-finger
`XP_057789253.1`	Pfam	`PF00097`	zf-C3HC4	Domain	142	183	1.3e-07	32.1	Zinc finger, C3HC4 type (RING finger)
`XP_057789253.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	142	183	1e-08	35.5	Zinc finger, C3HC4 type (RING finger)
`XP_057789253.1`	Pfam	`PF13639`	zf-RING_2	Domain	142	184	4.8e-16	59.4	Ring finger domain
`XP_057789253.1`	Pfam	`PF12678`	zf-rbx1	Domain	154	184	1e-07	32.8	RING-H2 zinc finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933270.1
TATATTGGATGCACTCAAACACACACTACTAATTAATTAATAAGATGGGCCTTCCCTTAATTTTGCCTCTCCCTTCCCTATTAGATAGAGCTCAACCCAATCAATTTTCCTTGATCTAAGCCTAAACCTTTCCCCAAATTCCCATGAGAGAGAGAGAGAGTGTGTGTGAACCCTTAATCTAGATAAACCTCAATTAGTTCCCTAAAATCGAGTTGACTCTTAAATTAATATGAAAACCAAAACCAAGCCTATATCTATAA...

CDS

1 records

下载 CDS FASTA

LOC131006114
ATGAGTGAGAGAGAGAGGGAGGAGAATTCTATTGAATCCATAATATCCAAGTTTACAAAAATTCAAAAAAAGAAAAAGAAAAAAAAAAAACCTCTTCTCTCACAAATGAATAACGCCACCGCTTTATCGGACTACAACGACAACCCCATCGGCGACACCGGGCTCGGCGGCGTCGGCTACGGCGTCGGCCTCTCCATCGCCGTCCTCGTCGTCTTCGTCGTCATCACCTACTTCTCCTACAAGTGCAAGCGATCGCAGAC...

Protein

1 records

下载 Protein FASTA

XP_057789253.1
MSEREREENSIESIISKFTKIQKKKKKKKKPLLSQMNNATALSDYNDNPIGDTGLGGVGYGVGLSIAVLVVFVVITYFSYKCKRSQTDSLSSSFRRRYSAGDGASVHVVIHRDGLDAAAISAFPLYTYGQLKPHKGGGAAGCAVCLSDFKESEEVRLLPECGHVFHRSCIDPWLMIHPTCPICRNSPLQTAVPTPLPASQPAPVANQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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