当前解析结果
SmilChr01G005807| 统一新 Gene ID | SmilChr01G005807 |
|---|---|
| 名称 | SmilChr01G005807 |
| 描述 | nuclear pore complex protein NUP62-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74109394 - 74110796 / - |
| NCBI Gene ID | LOC131013049 |
|---|---|
| GeneID | 131013049 |
| locus_tag | - |
| NCBI Name | LOC131013049 |
| 原始查询 | SmilChr01G005807 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nuclear pore complex protein NUP62-like |
| 产物 | nuclear pore complex protein NUP62-like |
| Arabidopsis | AT3G10650 (NUP1)nuclear pore complex protein [Source:NCBI gene (formerly Entrezgene);Acc:820234] identity=44.6; qcov=0.221; evalue=5.89e-08; confidence=weak |
| Rice | -- |
| GO | GO:0005635 (nuclear envelope); GO:0016973 (poly(A)+ mRNA export from nucleus); GO:0071763 (nuclear membrane organization) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013049 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057797037.1 |
| 2 | Nucleus membrane | 核膜 | 0.60000 | XP_057797037.1 |
| 3 | Nuclear pore complex | 核孔复合体 | 0.20000 | XP_057797037.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057797037.1 |
| 5 | Chloroplast | 叶绿体 | 0.20000 | XP_057797037.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74109488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B28,C60 |
Chr1:74109512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,B140 |
Chr1:74109888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:74109903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr1:74109920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,B84,C3,C39 |
Chr1:74109927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B124,B130,B76 |
Chr1:74109983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B74,B91,C51,C84,D5 |
Chr1:74109989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B124,C40,D7 |
Chr1:74110495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:74110522 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | B2 |
Chr1:74110522 |
G |
GT |
1bp_insertion | CDS_variant | 1 | B2 |
Chr1:74110537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。