当前解析结果
SmilChr01G005811| 统一新 Gene ID | SmilChr01G005811 |
|---|---|
| 名称 | SmilChr01G005811 |
| 描述 | RING-H2 finger protein ATL70-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74126729 - 74127211 / + |
| NCBI Gene ID | LOC131013070 |
|---|---|
| GeneID | 131013070 |
| locus_tag | - |
| NCBI Name | LOC131013070 |
| 原始查询 | SmilChr01G005811 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL70-like |
| 产物 | RING-H2 finger protein ATL70-like |
| Arabidopsis | AT5G06490 (AT5G06490)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830537] identity=31.6; qcov=1.21; evalue=1.65e-30; confidence=low |
| Rice | Os03g0788100- identity=36.8; qcov=0.969; evalue=7.31e-23; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013070 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057797058.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057797058.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057797058.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797058.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797058.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74126818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,C27,C3,C39 |
Chr1:74126877 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | C67 |
Chr1:74126877 |
C |
CG |
1bp_insertion | CDS_variant | 1 | C67 |
Chr1:74126890 |
CTT |
C |
2bp_deletion | frameshift_variant | 28 | A18,B1,B103,B11,B120,B127,B131,B140,B21,B25,B52,B54,B58,B63,B88,B98,C10,C11,C16,C24,C3,C47,C5,C50,C55,C6,C64,D10 |
Chr1:74126920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B45,C59 |
Chr1:74126921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C3 |
Chr1:74126922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C3 |
Chr1:74126973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:74126995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,B67 |
Chr1:74127160 |
G |
GGA |
2bp_insertion | frameshift_variant | 37 | A10,A19,B100,B103,B11,B127,B140,B15,B3,B39,B52,B54,B58,B75,B88,B9,B93,B98,B99,C1,C18,C2,C20,C21,C24,C27,C28,C3,C31,C38,C55,C57,C8,C85,C86,D10,D11 |
Chr1:74127187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B82 |
Chr1:74127195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,C35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797058.1PF17123
zf-RING_11 95-123 aa
PF13445
zf-RING_UBOX 95-126 aa
PF00097
zf-C3HC4 95-136 aa
PF13923
zf-C3HC4_2 95-136 aa
PF13639
zf-RING_2 95-137 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797058.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 95 | 123 | 3.9e-11 | 43.1 | RING-like zinc finger |
XP_057797058.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 95 | 126 | 2.3e-06 | 28.2 | RING-type zinc-finger |
XP_057797058.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 95 | 136 | 2.6e-07 | 31.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057797058.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 95 | 136 | 2e-08 | 34.6 | Zinc finger, C3HC4 type (RING finger) |
XP_057797058.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 95 | 137 | 5.2e-16 | 59.3 | Ring finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。