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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005817

染色体: Chr01 坐标: 74162034-74165609 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005817
名称SmilChr01G005817
描述receptor like protein 22-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向74162034 - 74165609 / +

ID 对照

NCBI Gene IDLOC131006131
GeneID131006131
locus_tag-
NCBI NameLOC131006131
原始查询SmilChr01G005817

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor like protein 22-like
产物receptor like protein 22-like
ArabidopsisAT1G71400 (RLP12)
receptor like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:843481]
identity=38.1; qcov=0.897; evalue=7.63e-114; confidence=medium
RiceOs01g0161000
-
identity=34.6; qcov=0.943; evalue=6.26e-100; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131006131

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057789276.1
2 Nucleus 细胞核 0.00000 XP_057789276.1
3 Chromosome 染色体 0.00000 XP_057789276.1
4 Centromere 着丝粒 0.00000 XP_057789276.1
5 Chromatin 染色质 0.00000 XP_057789276.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:74162094 G A EMS_canonical_SNV CDS_variant 5 B136,C15,C45,C84,D3
Chr1:74162115 C T EMS_canonical_SNV CDS_variant 2 B137,C40
Chr1:74162181 G A EMS_canonical_SNV CDS_variant 3 B111,B124,B134
Chr1:74162268 G A EMS_canonical_SNV CDS_variant 5 B36,B40,B93,C55,D5
Chr1:74162275 G A EMS_canonical_SNV CDS_variant 5 B31,B37,B82,C11,D6
Chr1:74162299 C T EMS_canonical_SNV CDS_variant 5 A11,B121,B124,C26,C7
Chr1:74162371 G A EMS_canonical_SNV CDS_variant 2 B26,C30
Chr1:74162429 TC T 1bp_deletion frameshift_variant 10 A20,B1,B121,B34,B57,B61,B82,C65,C75,C81
Chr1:74162469 G A EMS_canonical_SNV CDS_variant 3 B90,C71,C80
Chr1:74162477 G A EMS_canonical_SNV CDS_variant 1 C79
Chr1:74162485 G A EMS_canonical_SNV CDS_variant 1 B91
Chr1:74162491 C T EMS_canonical_SNV CDS_variant 3 B73,C4,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789276.1
729 aa
N
1
364
729
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_8
LRR_14
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 31-71 aa PF23598 LRR_14 95-207 aa PF00560 LRR_1 100-122 aa PF13855 LRR_8 150-209 aa PF00560 LRR_1 174-196 aa PF13855 LRR_8 174-233 aa PF23598 LRR_14 193-301 aa PF00560 LRR_1 198-220 aa PF00560 LRR_1 222-244 aa PF00560 LRR_1 247-268 aa PF00560 LRR_1 270-292 aa PF00560 LRR_1 297-316 aa PF00560 LRR_1 341-363 aa PF13855 LRR_8 341-400 aa PF00560 LRR_1 389-411 aa PF00560 LRR_1 464-481 aa PF00560 LRR_1 531-549 aa PF00560 LRR_1 552-573 aa PF00560 LRR_1 576-597 aa
XP_057789277.1
681 aa
N
1
340
681
LRRNT_2
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 31-71 aa PF00560 LRR_1 100-122 aa PF13855 LRR_8 150-209 aa PF00560 LRR_1 174-196 aa PF13855 LRR_8 174-233 aa PF00560 LRR_1 198-220 aa PF00560 LRR_1 222-244 aa PF00560 LRR_1 247-268 aa PF00560 LRR_1 270-291 aa PF00560 LRR_1 293-315 aa PF13855 LRR_8 293-352 aa PF00560 LRR_1 341-363 aa PF00560 LRR_1 416-433 aa PF00560 LRR_1 483-501 aa PF00560 LRR_1 504-525 aa PF00560 LRR_1 528-549 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789276.1 Pfam PF08263 LRRNT_2 Family 31 71 1.3e-10 42.0 Leucine rich repeat N-terminal domain
XP_057789276.1 Pfam PF23598 LRR_14 Repeat 95 207 1.9e-39 136.2 Leucine-rich repeat region
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 100 122 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF13855 LRR_8 Repeat 150 209 2.8e-38 130.2 Leucine rich repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 174 196 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF13855 LRR_8 Repeat 174 233 2.8e-38 130.2 Leucine rich repeat
XP_057789276.1 Pfam PF23598 LRR_14 Repeat 193 301 1.9e-39 136.2 Leucine-rich repeat region
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 198 220 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 222 244 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 247 268 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 270 292 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 297 316 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 341 363 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF13855 LRR_8 Repeat 341 400 2.8e-38 130.2 Leucine rich repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 389 411 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 464 481 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 531 549 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 552 573 1.6e-55 173.7 Leucine Rich Repeat
XP_057789276.1 Pfam PF00560 LRR_1 Repeat 576 597 1.6e-55 173.7 Leucine Rich Repeat
XP_057789277.1 Pfam PF08263 LRRNT_2 Family 31 71 1.2e-10 42.2 Leucine rich repeat N-terminal domain
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 100 122 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF13855 LRR_8 Repeat 150 209 6.3e-37 125.9 Leucine rich repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 174 196 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF13855 LRR_8 Repeat 174 233 6.3e-37 125.9 Leucine rich repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 198 220 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 222 244 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 247 268 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 270 291 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 293 315 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF13855 LRR_8 Repeat 293 352 6.3e-37 125.9 Leucine rich repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 341 363 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 416 433 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 483 501 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 504 525 5.3e-51 160.2 Leucine Rich Repeat
XP_057789277.1 Pfam PF00560 LRR_1 Repeat 528 549 5.3e-51 160.2 Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057933293.1
TAGGCTTCTTGTCTGCGCACACAACTATAATTAGCACTCTGCATTTGCGATATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTTGCCTTGAAATCTCAAATCACTTTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTGAGGCCAGTGTTTGTAGTTGGATCGGAGTTACTTG...
XM_057933294.1
TAGGCTTCTTGTCTGCGCACACAACTATAATTAGCACTCTGCATTTGCGATATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTTGCCTTGAAATCTCAAATCACTTTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTGAGGCCAGTGTTTGTAGTTGGATCGGAGTTACTTG...

CDS

2 records

下载 CDS FASTA
LOC131006131
ATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTTGCCTTGAAATCTCAAATCACTTTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTGAGGCCAGTGTTTGTAGTTGGATCGGAGTTACTTGTGATTCACATTACAATAGGGTGACTCAGTTGAATATATCGGACATGGGTCT...
LOC131006131
ATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTTGCCTTGAAATCTCAAATCACTTTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTGAGGCCAGTGTTTGTAGTTGGATCGGAGTTACTTGTGATTCACATTACAATAGGGTGACTCAGTTGAATATATCGGACATGGGTCT...

Protein

2 records

下载 Protein FASTA
XP_057789276.1
MERVSSYFLVLALLLPIHYLMDYSSAKNDINTDRSSLLALKSQITLDPQNILTQNWSTEASVCSWIGVTCDSHYNRVTQLNISDMGLVGTLPPEIGNLSSLVSLDVNENSFHGPIPPSIFNLSFLEVLEVRNNSLSSSLPLDMCKHNLHRLRRLRISYNEMYGEIPSSLEKCSQLEYLSLVNNTFTGFVPTEIGNLTKLQELYLGVNKLTDTIPKEIGNLRNLQELWLHSNELSGSIPREVGNMTALVRLSLGNNSLSGT...
XP_057789277.1
MERVSSYFLVLALLLPIHYLMDYSSAKNDINTDRSSLLALKSQITLDPQNILTQNWSTEASVCSWIGVTCDSHYNRVTQLNISDMGLVGTLPPEIGNLSSLVSLDVNENSFHGPIPPSIFNLSFLEVLEVRNNSLSSSLPLDMCKHNLHRLRRLRISYNEMYGEIPSSLEKCSQLEYLSLVNNTFTGFVPTEIGNLTKLQELYLGVNKLTDTIPKEIGNLRNLQELWLHSNELSGSIPREVGNMTALVRLSLGNNSLSGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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