Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005821`

染色体: Chr01 坐标: 74207215-74210838 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005821`
名称	SmilChr01G005821
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74207215 - 74210838 / `-`

ID 对照

NCBI Gene ID	`LOC131006129`
GeneID	`131006129`
locus_tag	`-`
NCBI Name	`LOC131006129`
原始查询	`SmilChr01G005821`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=23.7; qcov=0.95; evalue=1.8e-40; confidence=weak
Rice	`Os06g0146100` (Pi9(t)) - identity=23; qcov=1.02; evalue=1.76e-38; confidence=weak
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131006129

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057789273.1`
2	Cytoplasm	细胞质	0.20000	`XP_057789273.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789273.1`
4	Nucleus	细胞核	0.00000	`XP_057789273.1`
5	Chromosome	染色体	0.00000	`XP_057789273.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74207920`	`T`	`TGC`	2bp_insertion	frameshift_variant	5	B114,B61,C36,C52,C62
`Chr1:74207920`	`T`	`TGC`	2bp_insertion	CDS_variant	5	B114,B61,C36,C52,C62
`Chr1:74207938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr1:74207957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B133
`Chr1:74207977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr1:74207981`	`G`	`GAA`	2bp_insertion	frameshift_variant	5	A10,A8,B130,B68,B94
`Chr1:74207981`	`G`	`GAA`	2bp_insertion	CDS_variant	5	A10,A8,B130,B68,B94
`Chr1:74207983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A8,B130,B68,B94
`Chr1:74207986`	`TGC`	`T`	2bp_deletion	frameshift_variant	5	A10,A8,B130,B68,B94
`Chr1:74207986`	`TGC`	`T`	2bp_deletion	CDS_variant	5	A10,A8,B130,B68,B94
`Chr1:74207996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A8,B130,B68,B94
`Chr1:74208024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,C14,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789273.1

896 aa

448

896

NB-ARC

LRR_14

PF00931 NB-ARC 173-339 aa PF23598 LRR_14 581-858 aa

XP_057789274.1

896 aa

448

896

NB-ARC

LRR_14

PF00931 NB-ARC 173-339 aa PF23598 LRR_14 581-858 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789273.1`	Pfam	`PF00931`	NB-ARC	Domain	173	339	3.6e-25	89.2	NB-ARC domain
`XP_057789273.1`	Pfam	`PF23598`	LRR_14	Repeat	581	858	1.6e-13	50.9	Leucine-rich repeat region
`XP_057789274.1`	Pfam	`PF00931`	NB-ARC	Domain	173	339	3.6e-25	89.2	NB-ARC domain
`XP_057789274.1`	Pfam	`PF23598`	LRR_14	Repeat	581	858	1.6e-13	50.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933290.1
GGCCTCTTCCCCTAGTACACGAATTGGTGGAGGGAATAAGTAATAAACAAACATTTGACAGTGAAATGTTCCTTTCCTCGAATTAATAAAAATATTGTTCCTTTCCTCGAATTAATCGTTAGCTTAAATAATTGAGCAGGTATTGTTTTATTTTAATATTTCAAATCCAAGCTATCCATATCTCAAGGTAAAGAAAAAAGTGAAAAAAGAACTCTGCCGACTTCATTTCGCCGCCGCCGCCGGAGAGGAATGACGGCATA...

XM_057933291.1
GGCCTCTTCCCCTAGTACACGAATTGGTGGAGGGAATAAGTAATAAACAAACATTTGACAGTGAAATGTTCCTTTCCTCGAATTAATAAAAATATTGTTCCTTTCCTCGAATTAATCGTTAGCTTAAATAATTGAGCAGGTATTGTTTTATTTTAATATTTCAAATCCAAGCTATCCATATCTCAAGGTAAAGAAAAAAGTGAAAAAAGAACTCTGCCGACTTCATTTCGCCGCCGCCGCCGGAGAGGAATGACGGCATA...

CDS

2 records

下载 CDS FASTA

LOC131006129
ATGACGGCATATGGTGCAGTGATTTCTCTAGGGAATAAGATTGATTATATTCTCCATTCTTCTCATTTTAGTCTTATTGAGCCCTCTCCACATATTTTACAACTCGCCTACGAGGAGTTGAATCCATTGCAAGAAATTCTTGAAAGATTAGATAAAACAAGAACAAGCAAGAGCAGGAAGAAGGTGAATGCTTTGGATGGAATAATCAAGGATTTGATAAGGGAATTCGAAGACTTATTAGAATCCCTTCTCTATCAACA...

Protein

2 records

下载 Protein FASTA

XP_057789273.1
MTAYGAVISLGNKIDYILHSSHFSLIEPSPHILQLAYEELNPLQEILERLDKTRTSKSRKKVNALDGIIKDLIREFEDLLESLLYQQIHSRIRADQVYEEMKKRVLHNINGGERFSIDLHCLEDDARSFIERVKNMEKEYIYEVDNMPEDDDEEESISSTIGTKSKLIGLSDQFQQLKGRLIKSFIMRDYLFILVGTAGVGKTALAKAVFEDHDISRLFEHRAWVRVGRKSQFDDVSRGILAQMFGITQGDRELGAYMKE...

XP_057789274.1
MTAYGAVISLGNKIDYILHSSHFSLIEPSPHILQLAYEELNPLQEILERLDKTRTSKSRKKVNALDGIIKDLIREFEDLLESLLYQQIHSRIRADQVYEEMKKRVLHNINGGERFSIDLHCLEDDARSFIERVKNMEKEYIYEVDNMPEDDDEEESISSTIGTKSKLIGLSDQFQQLKGRLIKSFIMRDYLFILVGTAGVGKTALAKAVFEDHDISRLFEHRAWVRVGRKSQFDDVSRGILAQMFGITQGDRELGAYMKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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