当前解析结果
SmilChr01G005822| 统一新 Gene ID | SmilChr01G005822 |
|---|---|
| 名称 | SmilChr01G005822 |
| 描述 | putative receptor like protein 25 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74227183 - 74229632 / + |
| NCBI Gene ID | LOC131006139 |
|---|---|
| GeneID | 131006139 |
| locus_tag | - |
| NCBI Name | LOC131006139 |
| 原始查询 | SmilChr01G005822 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor like protein 25 |
| 产物 | putative receptor like protein 25 |
| Arabidopsis | AT2G32660 (RLP22)receptor like protein 22 [Source:NCBI gene (formerly Entrezgene);Acc:817826] identity=45.8; qcov=0.926; evalue=1.57e-62; confidence=high |
| Rice | Os12g0221700- identity=42.7; qcov=0.923; evalue=1.5e-61; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006139 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789291.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789291.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789291.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789291.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789291.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74228618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B113,D6 |
Chr1:74228728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C6 |
Chr1:74228759 |
A |
AT |
1bp_insertion | frameshift_variant | 8 | B29,B5,B53,C42,C77,C80,C83,D8 |
Chr1:74228764 |
TA |
T |
1bp_deletion | frameshift_variant | 9 | B29,B5,B53,B60,C42,C77,C80,C83,D8 |
Chr1:74228820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B10,B30,B47,B86 |
Chr1:74228834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:74228849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B133,B89 |
Chr1:74228866 |
AGC |
A |
2bp_deletion | frameshift_variant | 2 | B12,B82 |
Chr1:74228866 |
AGC |
A |
2bp_deletion | CDS_variant | 2 | B12,B82 |
Chr1:74228885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:74229029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B126,C24 |
Chr1:74229193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789291.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 98-118 aa
PF13855
LRR_8 98-155 aa
PF13516
LRR_6 121-134 aa
PF00560
LRR_1 121-142 aa
PF00560
LRR_1 145-166 aa
PF00560
LRR_1 169-186 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789291.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 1.3e-20 | 69.7 | Leucine Rich Repeat |
XP_057789291.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 98 | 118 | 1.3e-20 | 69.7 | Leucine Rich Repeat |
XP_057789291.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 98 | 155 | 1.3e-13 | 51.2 | Leucine rich repeat |
XP_057789291.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 121 | 134 | 1.5e-06 | 28.6 | Leucine Rich repeat |
XP_057789291.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 142 | 1.3e-20 | 69.7 | Leucine Rich Repeat |
XP_057789291.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 166 | 1.3e-20 | 69.7 | Leucine Rich Repeat |
XP_057789291.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 169 | 186 | 1.3e-20 | 69.7 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。