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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005828

染色体: Chr01 坐标: 74277791-74324746 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005828
名称SmilChr01G005828
描述receptor-like protein 52
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向74277791 - 74324746 / +

ID 对照

NCBI Gene IDLOC131006124
GeneID131006124
locus_tag-
NCBI NameLOC131006124
原始查询SmilChr01G005828

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor-like protein 52
产物receptor-like protein 52
ArabidopsisAT5G25910 (RLP52)
receptor like protein 52 [Source:NCBI gene (formerly Entrezgene);Acc:832660]
identity=36.5; qcov=1.01; evalue=9.39e-142; confidence=medium
RiceOs10g0469300
-
identity=34.5; qcov=0.87; evalue=4.09e-112; confidence=low
GOGO:0005515 (protein binding); GO:0005886 (plasma membrane); GO:0009755 (hormone-mediated signaling pathway)
KEGG-
PfamPF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131006124

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057789261.1
2 Nucleus 细胞核 0.00000 XP_057789261.1
3 Chromosome 染色体 0.00000 XP_057789261.1
4 Centromere 着丝粒 0.00000 XP_057789261.1
5 Chromatin 染色质 0.00000 XP_057789261.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:74278020 G A EMS_canonical_SNV CDS_variant 4 A4,B132,B25,B8
Chr1:74278032 CT C 1bp_deletion frameshift_variant 2 B51,B66
Chr1:74278032 CT C 1bp_deletion CDS_variant 2 B51,B66
Chr1:74278051 C T EMS_canonical_SNV CDS_variant 2 B51,B66
Chr1:74278147 ACT A 2bp_deletion frameshift_variant 15 A13,B105,B11,B115,B132,B136,B138,B26,B41,B75,C41,C44,C67,C68,C74
Chr1:74278198 G A EMS_canonical_SNV CDS_variant 5 B20,B79,C24,C55,C74
Chr1:74278231 C T EMS_canonical_SNV CDS_variant 5 A14,B135,B35,C39,C70
Chr1:74278236 C T EMS_canonical_SNV CDS_variant 5 A10,B51,B53,B74,C10
Chr1:74278285 C T EMS_canonical_SNV CDS_variant 1 D5
Chr1:74278294 G A EMS_canonical_SNV CDS_variant 4 B10,C1,C73,C8
Chr1:74278313 C T EMS_canonical_SNV CDS_variant 5 B11,B31,C56,D4,D7
Chr1:74278341 C T EMS_canonical_SNV CDS_variant 5 B114,B122,B39,B77,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789261.1
927 aa
N
1
464
927
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_1
LRR_14
LRR_1
LRR_14
LRR_1
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 31-71 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 176-196 aa PF00560 LRR_1 201-221 aa PF00560 LRR_1 223-245 aa PF00560 LRR_1 247-269 aa PF00560 LRR_1 272-293 aa PF23598 LRR_14 284-375 aa PF00560 LRR_1 295-317 aa PF00560 LRR_1 320-341 aa PF23598 LRR_14 327-421 aa PF00560 LRR_1 368-389 aa PF23598 LRR_14 381-468 aa PF00560 LRR_1 416-437 aa PF23598 LRR_14 426-519 aa PF00560 LRR_1 439-461 aa PF13855 LRR_8 463-522 aa PF00560 LRR_1 464-485 aa PF00560 LRR_1 512-533 aa PF00560 LRR_1 538-556 aa PF00560 LRR_1 583-605 aa PF00560 LRR_1 658-675 aa PF00560 LRR_1 724-744 aa PF00560 LRR_1 747-768 aa PF00560 LRR_1 771-792 aa
XP_057789262.1
855 aa
N
1
428
855
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_1
LRR_14
LRR_1
LRR_14
LRR_1
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 31-71 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 176-196 aa PF00560 LRR_1 201-221 aa PF23598 LRR_14 212-303 aa PF00560 LRR_1 223-245 aa PF00560 LRR_1 248-269 aa PF23598 LRR_14 255-348 aa PF00560 LRR_1 296-317 aa PF23598 LRR_14 309-396 aa PF00560 LRR_1 344-365 aa PF23598 LRR_14 356-447 aa PF00560 LRR_1 367-389 aa PF13855 LRR_8 391-450 aa PF00560 LRR_1 392-413 aa PF00560 LRR_1 440-461 aa PF00560 LRR_1 466-484 aa PF00560 LRR_1 511-533 aa PF00560 LRR_1 586-603 aa PF00560 LRR_1 652-672 aa PF00560 LRR_1 675-696 aa PF00560 LRR_1 699-720 aa
XP_057789263.1
802 aa
N
1
401
802
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
C
PF08263 LRRNT_2 31-71 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 176-196 aa PF00560 LRR_1 201-221 aa PF00560 LRR_1 223-245 aa PF00560 LRR_1 247-269 aa PF00560 LRR_1 272-293 aa PF23598 LRR_14 284-373 aa PF00560 LRR_1 295-317 aa PF13855 LRR_8 319-378 aa PF00560 LRR_1 320-341 aa PF00560 LRR_1 368-388 aa PF00560 LRR_1 391-413 aa PF00560 LRR_1 415-437 aa PF13855 LRR_8 416-474 aa PF00560 LRR_1 463-485 aa PF13855 LRR_8 463-522 aa PF00560 LRR_1 538-555 aa PF00560 LRR_1 604-624 aa PF13855 LRR_8 604-661 aa PF00560 LRR_1 627-648 aa PF00560 LRR_1 651-672 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789261.1 Pfam PF08263 LRRNT_2 Family 31 71 6.9e-11 43.0 Leucine rich repeat N-terminal domain
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 100 122 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 150 172 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 176 196 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 201 221 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 223 245 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 247 269 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 272 293 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF23598 LRR_14 Repeat 284 375 5e-65 220.3 Leucine-rich repeat region
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 295 317 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 320 341 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF23598 LRR_14 Repeat 327 421 5e-65 220.3 Leucine-rich repeat region
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 368 389 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF23598 LRR_14 Repeat 381 468 5e-65 220.3 Leucine-rich repeat region
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 416 437 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF23598 LRR_14 Repeat 426 519 5e-65 220.3 Leucine-rich repeat region
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 439 461 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF13855 LRR_8 Repeat 463 522 9.7e-60 198.9 Leucine rich repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 464 485 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 512 533 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 538 556 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 583 605 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 658 675 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 724 744 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 747 768 1e-78 242.8 Leucine Rich Repeat
XP_057789261.1 Pfam PF00560 LRR_1 Repeat 771 792 1e-78 242.8 Leucine Rich Repeat
XP_057789262.1 Pfam PF08263 LRRNT_2 Family 31 71 7e-11 42.9 Leucine rich repeat N-terminal domain
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 100 122 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 150 172 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 176 196 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 201 221 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF23598 LRR_14 Repeat 212 303 1e-58 199.5 Leucine-rich repeat region
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 223 245 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 248 269 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF23598 LRR_14 Repeat 255 348 1e-58 199.5 Leucine-rich repeat region
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 296 317 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF23598 LRR_14 Repeat 309 396 1e-58 199.5 Leucine-rich repeat region
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 344 365 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF23598 LRR_14 Repeat 356 447 1e-58 199.5 Leucine-rich repeat region
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 367 389 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF13855 LRR_8 Repeat 391 450 5.8e-49 164.4 Leucine rich repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 392 413 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 440 461 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 466 484 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 511 533 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 586 603 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 652 672 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 675 696 9.6e-69 213.1 Leucine Rich Repeat
XP_057789262.1 Pfam PF00560 LRR_1 Repeat 699 720 9.6e-69 213.1 Leucine Rich Repeat
XP_057789263.1 Pfam PF08263 LRRNT_2 Family 31 71 5.5e-11 43.3 Leucine rich repeat N-terminal domain
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 100 122 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 150 172 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 176 196 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 201 221 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 223 245 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 247 269 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 272 293 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF23598 LRR_14 Repeat 284 373 3.9e-48 164.7 Leucine-rich repeat region
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 295 317 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF13855 LRR_8 Repeat 319 378 5.4e-53 177.3 Leucine rich repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 320 341 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 368 388 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 391 413 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 415 437 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF13855 LRR_8 Repeat 416 474 5.4e-53 177.3 Leucine rich repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 463 485 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF13855 LRR_8 Repeat 463 522 5.4e-53 177.3 Leucine rich repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 538 555 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 604 624 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF13855 LRR_8 Repeat 604 661 5.4e-53 177.3 Leucine rich repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 627 648 2.3e-68 211.9 Leucine Rich Repeat
XP_057789263.1 Pfam PF00560 LRR_1 Repeat 651 672 2.3e-68 211.9 Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057933280.1
TTAACTTTTCCCATTTTCCACAACTACCTTATAGTGACTTAATTCATTTCCCTAATTTCGAATATCATTTGAAACTTTCAGACAAAATAACTGTTGCTCGAAATGATTATAGAAGCTTCTTTCATTTTCCATTAATGGGACCAAAAAAATGTGGCCATATAAATGGCATGAGCTAGGCTTCTTGTCTGCGCACACAACTACAATTAGCACTCTGCATTTGCGATATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCA...
XM_057933278.1
CTTTTCCCATTTTCCACAACTACCTTATAGTGACTTAATTCATTTCCCTAATTTCGAATATCATTTGAAACTTTCAGACAAAATAACTGTTGCTCGAAATGATTATAGAAGCTTCTTTCATTTTCCATTAATGGGACCAAAAAAATGTGGCCATATAAATGGCATGAGCTAGGCTTCTTGTCTGCGCACACAACTACAATTAGCACTCTGCATTTGCGATATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCACTAC...

CDS

3 records

下载 CDS FASTA
LOC131006124
ATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTTGCCTTGAAATCTCAAATCACTTTAGATCCTCAAAATGTATTAACCCGAAATTGGAGCACTGAAGCCAGTGTTTGTAGTTGGATCGGAGTTACTTGTGATTCACATTACAATAGGGTGACTCAGTTGAATATATCGGACATGGGTCT...
LOC131006124
ATGGAGAGAGTTTCTTCCTATTTTCTCGTGCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTTGCCTTGAAATCTCAAATCACTTTAGATCCTCAAAATGTATTAACCCGAAATTGGAGCACTGAAGCCAGTGTTTGTAGTTGGATCGGAGTTACTTGTGATTCACATTACAATAGGGTGACTCAGTTGAATATATCGGACATGGGTCT...

Protein

3 records

下载 Protein FASTA
XP_057789261.1
MERVSSYFLVLALLLPIHYLMDYSSAKNDINTDRSSLLALKSQITLDPQNVLTRNWSTEASVCSWIGVTCDSHYNRVTQLNISDMGLVGTLPPEIGNLSSLVSLDVNENSFHGPIPPSIFNMSFLEVLEVRNNSLSSSLPLDMCKHNLHRLKRLRLSYNELYGEIPSSLGQCSQFEYLSLYNNNFTGFVPREIGNLTKLHEVLNLGENQLTGVIPEEIHHLHNLAVLDLSWNKLSGTLPPTIFNMSSLTMIDLSSNTFSG...
XP_057789262.1
MERVSSYFLVLALLLPIHYLMDYSSAKNDINTDRSSLLALKSQITLDPQNVLTRNWSTEASVCSWIGVTCDSHYNRVTQLNISDMGLVGTLPPEIGNLSSLVSLDVNENSFHGPIPPSIFNMSFLEVLEVRNNSLSSSLPLDMCKHNLHRLKRLRLSYNELYGEIPSSLGQCSQFEYLSLYNNNFTGFVPREIGNLTKLHEVLNLGENQLTGTIPKEIGNLHNLQDMWLSSNELSGSIPREVGNMTALMKLYLDYNRLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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