Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005831`

染色体: Chr01 坐标: 74320492-74322068 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005831`
名称	SmilChr01G005831
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74320492 - 74322068 / `+`

ID 对照

NCBI Gene ID	`LOC131006137`
GeneID	`131006137`
locus_tag	`-`
NCBI Name	`LOC131006137`
原始查询	`SmilChr01G005831`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=42.7; qcov=0.727; evalue=3.48e-49; confidence=medium
Rice	`Os05g0170300` - identity=40.1; qcov=0.875; evalue=1.52e-48; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131006137

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789287.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057789287.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057789287.1`
4	Nucleus	细胞核	0.00000	`XP_057789287.1`
5	Chromosome	染色体	0.00000	`XP_057789287.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74320822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr1:74320828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B54
`Chr1:74320877`	`CA`	`C`	1bp_deletion	frameshift_variant	6	B104,B136,B63,B83,C18,C7
`Chr1:74320904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:74320979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:74320993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B99
`Chr1:74321005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,C1
`Chr1:74321059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B72
`Chr1:74321077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:74321078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:74321097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,B54,C61
`Chr1:74321145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B136,B31,B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789287.1

319 aa

160

319

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_4

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 51-91 aa PF00560 LRR_1 120-142 aa PF00560 LRR_1 145-164 aa PF00560 LRR_1 170-192 aa PF13855 LRR_8 170-229 aa PF00560 LRR_1 194-216 aa PF12799 LRR_4 194-230 aa PF00560 LRR_1 218-240 aa PF13855 LRR_8 218-277 aa PF00560 LRR_1 242-264 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789287.1`	Pfam	`PF08263`	LRRNT_2	Family	51	91	2.4e-11	44.4	Leucine rich repeat N-terminal domain
`XP_057789287.1`	Pfam	`PF00560`	LRR_1	Repeat	120	142	7.7e-26	85.3	Leucine Rich Repeat
`XP_057789287.1`	Pfam	`PF00560`	LRR_1	Repeat	145	164	7.7e-26	85.3	Leucine Rich Repeat
`XP_057789287.1`	Pfam	`PF00560`	LRR_1	Repeat	170	192	7.7e-26	85.3	Leucine Rich Repeat
`XP_057789287.1`	Pfam	`PF13855`	LRR_8	Repeat	170	229	5.9e-19	68.3	Leucine rich repeat
`XP_057789287.1`	Pfam	`PF00560`	LRR_1	Repeat	194	216	7.7e-26	85.3	Leucine Rich Repeat
`XP_057789287.1`	Pfam	`PF12799`	LRR_4	Repeat	194	230	5.7e-16	58.9	Leucine Rich repeats (2 copies)
`XP_057789287.1`	Pfam	`PF00560`	LRR_1	Repeat	218	240	7.7e-26	85.3	Leucine Rich Repeat
`XP_057789287.1`	Pfam	`PF13855`	LRR_8	Repeat	218	277	5.9e-19	68.3	Leucine rich repeat
`XP_057789287.1`	Pfam	`PF00560`	LRR_1	Repeat	242	264	7.7e-26	85.3	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933304.1
GCCAAAACTTATAATGCTATTTTAATATGAATTTTAGGGTCATTTTTTAAGATTTGGGTTAGACTCAATCTCCCAAATCGAACAGAAAGTAGCTTTCCATATAAATAGTCTTAGTTGCTTTTGCCTCCAAAAATCACTCTTTATAGTTCCACAATTATTTTCTTCGTCTTTTCCTCATTCACACTCCAATTAATTATTTTCTCCGTCTTTGTCTTTCCAATGGGAAAAATATTATTTTAGCTTTGAATAAAAGGAAACTC...

CDS

1 records

下载 CDS FASTA

LOC131006137
ATGTATATGGATTTCATAGTTCAATATTCTAAAAAATTACTACTGTCAAAATCAAGCCAAAAAATGCCAAAATCTCCCCATTTTCTCATCCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAACCGATATCAACACCGATCGTTCTACCCTTCTCGCCTTAAAATCCCAAATCACATTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACCGAAGCCAGTGTTTGCAGTTGGATCGG...

Protein

1 records

下载 Protein FASTA

XP_057789287.1
MYMDFIVQYSKKLLLSKSSQKMPKSPHFLILALLLPIHYLMDYSSAKTDINTDRSTLLALKSQITLDPQNILTQNWSTEASVCSWIGVTCDSRYNRVTQLNISSMGLVGTLPPEIGNLSSLVSLDVNENSFHGPIPPSIFNMSFLEVLELRNNSLSSSLPLDMCTHNLHRLKRLRLSYNELYGEIPSSLGQCSQLEYLSLYNNNFTGFVPTEIGNLTKLQELYLGENQLTGVIPQQIHHLDNLGVLDLSLNKLSGTLPPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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