Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005838

染色体: Chr01 坐标: 74390692-74395307 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005838
名称SmilChr01G005838
描述uncharacterized SmilChr01G005838
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向74390692 - 74395307 / -

ID 对照

NCBI Gene IDLOC131006138
GeneID131006138
locus_tag-
NCBI NameLOC131006138
原始查询SmilChr01G005838

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述confidence=no_hit
产物confidence=no_hit
Arabidopsis-
-
Rice-
-
GOGO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131006138

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057789288.1
2 Cytoplasm 细胞质 0.20000 XP_057789288.1
3 Chromosome 染色体 0.00000 XP_057789288.1
4 Centromere 着丝粒 0.00000 XP_057789288.1
5 Chromatin 染色质 0.00000 XP_057789288.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:74391007 G A EMS_canonical_SNV CDS_variant 2 B140,C85
Chr1:74391017 G A EMS_canonical_SNV CDS_variant 2 B42,B43
Chr1:74391021 G A EMS_canonical_SNV stop_gained 150 A1,A10,A11,A15,A19,A21,A22,A8,B1,B10,B101,B102,B105,B107,B108,B11,B111,B113,B115,B117,B119,B120,B121,B123,B124,B125,B126,B127,B129,B131,B134,B135,B136,B14,B140,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B33,B34,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B49,B51,B52,B54,B55,B56,B57,B58,B59,B60,B63,B64,B66,B67,B69,B71,B72,B73,B74,B75,B76,B80,B81,B83,B85,B86,B87,B89,B9,B90,B91,B92,B93,B96,B97,B99,C1,C10,C11,C12,C13,C14,C15,C17,C18,C20,C23,C24,C28,C31,C33,C35,C38,C43,C49,C51,C55,C56,C6,C60,C61,C62,C65,C67,C69,C70,C72,C74,C75,C77,C78,C79,C80,C81,C82,C83,C84,C85,C86,C87,D1,D2,D3,D6,D8,D9
Chr1:74391375 CCT C 2bp_deletion frameshift_variant 2 A2,B122
Chr1:74391380 T TGC 2bp_insertion frameshift_variant 2 A2,B122
Chr1:74391380 T TGC 2bp_insertion CDS_variant 2 A2,B122
Chr1:74391435 GTC G 2bp_deletion frameshift_variant 6 B104,B123,B36,B95,C48,C52
Chr1:74391439 AT A 1bp_deletion frameshift_variant 4 B104,B123,C48,C52
Chr1:74391439 AT A 1bp_deletion CDS_variant 4 B104,B123,C48,C52
Chr1:74391442 CCA C 2bp_deletion frameshift_variant 7 A5,B36,B54,B75,B84,B95,D5
Chr1:74391445 T TA 1bp_insertion frameshift_variant 3 A15,B131,C71
Chr1:74391445 T TA 1bp_insertion CDS_variant 3 A15,B131,C71

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057933305.1
TTCGTTTCCCCTTTCTTTGATGAAGTCAAACATAATCTTTTCTCAGCCCAATCAAGTTTTGCAGAACAAGAAGAAGAAGGAGCCTCGCGGCCGTGCTCACAACCTTCGTTTTGTCACAGCCGGCTTCATTTCTGTCACTGCCGCCGCTGCCACCGCAACGAGAGAGGAATGACGGCTTACGGTGCAGTGAATTCGCTGAGGAATACAATTGATTATATTCTCTATTCTTCTCATTATAGCCTCGTTGATCCCTCTCCACA...
XM_057933307.1
AACATAATCTTTTCTCAGCCCAATCAAGTTTTGCAGAACAAGAAGAAGAAGGAGCCTCGCGGCCGTGCTCACAACCTTCGTTTTGTCACAGCCGAAAGTAAGGAGCTACTGTGCGAGAAGGTGTTTGGTGAAGAGGGTTGCCCTTTTCACCTTGACAAAGCCGCTACCAAAATAGCCAAGAACTGTGAAGGTCTTCCTCTCATGATAGTCATAGTGGCTGACATCATATCAAAAGCACAGAACAATACAGACCCCAAATA...

CDS

3 records

下载 CDS FASTA
LOC131006138
ATGAAAGAGTTAGAGCATATTGAGATATTGGGGAAGAGCCTTGTAGCTCCGTGTCATTCTACTTCTTTAGAAAAGCTCTCAACACTTGTAGGTGTGAATGCCAGCATTTCTACTATCTTGGAACACTCTTGGAAATTTCCTTGTATAAGGAAATTAGGAGTTCAGATCGAGCTTACACCTTATGATGACCATAATGACCTTTTGAGTTGCTTTGGTTGTATTTCAAGACTTGAAAGTTTGGAGATATTGAAATGTAGCAT...
LOC131006138
ATGAAAGAGTTAGAGCATATTGAGATATTGGGGAAGAGCCTTGTAGCTCCGTGTCATTCTACTTCTTTAGAAAAGCTCTCAACACTTGTAGGTGTGAATGCCAGCATTTCTACTATCTTGGAACACTCTTGGAAATTTCCTTGTATAAGGAAATTAGGAGTTCAGATCGAGCTTACACCTTATGATGACCATAATGACCTTTTGAGTTGCTTTGGTTGTATTTCAAGACTTGAAAGTTTGGAGATATTGAAATGTAGCAT...

Protein

3 records

下载 Protein FASTA
XP_057789288.1
MKELEHIEILGKSLVAPCHSTSLEKLSTLVGVNASISTILEHSWKFPCIRKLGVQIELTPYDDHNDLLSCFGCISRLESLEILKCSITNPVAKYDYVFPSSLIIFPRGLKKLHLSGMSFPWEYMDVIGSLPYLIVLKLRAYAFRGSKWEAQEGSFMKVKFLLIEDSDLVQWKPRTGSFPELKLLRMKHCYKLEEIHWPSKISFGAMELENCNPVAVASAKQLQLSYGIDIDVTASSSFDEKPITIKFKSSMMSLINGLRL...
XP_057789289.1
MKELEHIEILGKSLVAPCHSTSLEKLSTLVGVNASISTILEHSWKFPCIRKLGVQIELTPYDDHNDLLSCFGCISRLESLEILKCSITNPVAKYDYVFPSSLIIFPRGLKKLHLSGMSFPWEYMDVIGSLPYLIVLKLRAYAFRGSKWEAQEGSFMKVKFLLIEDSDLVQWKPRTGSFPELKLLRMKHCYKLEEIHWPSKISFGAMELENCNPVAVASAKQLQLSYGIDIDVTASSSFDEKPITIKFKSSMMSLINGLRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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