当前解析结果
SmilChr01G005842| 统一新 Gene ID | SmilChr01G005842 |
|---|---|
| 名称 | SmilChr01G005842 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74411756 - 74415570 / - |
| NCBI Gene ID | LOC131006125 |
|---|---|
| GeneID | 131006125 |
| locus_tag | - |
| NCBI Name | LOC131006125 |
| 原始查询 | SmilChr01G005842 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=27; qcov=0.594; evalue=2.9e-15; confidence=low |
| Rice | Os04g0118800- identity=27.3; qcov=0.677; evalue=1.5e-20; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0050832 (defense response to fungus) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006125 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789266.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057789266.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789267.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789267.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789267.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74411953 |
G |
A |
EMS_canonical_SNV | stop_gained | 97 | A10,A11,A13,A2,A5,A7,B10,B102,B103,B105,B107,B11,B111,B115,B121,B124,B126,B127,B130,B132,B134,B137,B138,B15,B17,B18,B22,B25,B27,B29,B3,B30,B33,B34,B35,B36,B37,B4,B43,B46,B52,B54,B61,B67,B7,B73,B74,B76,B82,B84,B89,B9,B92,B93,B94,C11,C15,C16,C18,C19,C20,C21,C24,C25,C26,C27,C28,C3,C30,C36,C38,C40,C41,C43,C44,C45,C52,C53,C55,C56,C59,C6,C61,C63,C64,C65,C66,C67,C69,C73,C75,C76,C77,C81,D1,D10,D8 |
Chr1:74411954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr1:74412190 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B129,B6,C22,C63,C67 |
Chr1:74412190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B6,C22,C63,C67 |
Chr1:74412198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr1:74412253 |
TTC |
T |
2bp_deletion | frameshift_variant | 3 | A5,C34,C74 |
Chr1:74412253 |
TTC |
T |
2bp_deletion | CDS_variant | 3 | A5,C34,C74 |
Chr1:74412255 |
CT |
* |
1bp_deletion | CDS_variant | 3 | A5,C34,C74 |
Chr1:74412258 |
C |
CAT |
2bp_insertion | frameshift_variant | 3 | A5,C34,C74 |
Chr1:74412258 |
C |
CAT |
2bp_insertion | CDS_variant | 3 | A5,C34,C74 |
Chr1:74412267 |
T |
TGA |
2bp_insertion | frameshift_variant | 206 | A1,A10,A11,A13,A14,A15,A18,A19,A20,A21,A22,A24,A25,A3,A4,A6,A7,A8,A9,B1,B100,B101,B102,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B117,B12,B120,B122,B123,B124,B125,B126,B127,B128,B129,B131,B133,B135,B136,B137,B138,B139,B14,B140,B16,B17,B19,B2,B20,B23,B24,B25,B26,B27,B28,B29,B3,B31,B32,B34,B36,B37,B38,B39,B40,B41,B42,B44,B45,B46,B47,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B60,B62,B63,B64,B65,B66,B67,B68,B69,B70,B71,B72,B73,B74,B76,B77,B78,B79,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C10,C12,C13,C14,C15,C17,C18,C19,C2,C22,C23,C24,C27,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C62,C67,C68,C7,C70,C71,C72,C73,C74,C77,C78,C79,C8,C80,C82,C83,C84,C85,C86,C87,C9,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr1:74412345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789265.1PF00931
NB-ARC 190-263 aa
PF00931
NB-ARC 268-344 aa
XP_057789266.1PF00931
NB-ARC 190-263 aa
PF00931
NB-ARC 268-344 aa
XP_057789267.1PF00931
NB-ARC 190-263 aa
PF00931
NB-ARC 268-344 aa
XP_057789268.1PF00931
NB-ARC 190-263 aa
PF00931
NB-ARC 268-344 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789265.1 |
Pfam | PF00931 |
NB-ARC | Domain | 190 | 263 | 1.6e-21 | 77.3 | NB-ARC domain |
XP_057789265.1 |
Pfam | PF00931 |
NB-ARC | Domain | 268 | 344 | 1.6e-21 | 77.3 | NB-ARC domain |
XP_057789266.1 |
Pfam | PF00931 |
NB-ARC | Domain | 190 | 263 | 1.9e-22 | 80.4 | NB-ARC domain |
XP_057789266.1 |
Pfam | PF00931 |
NB-ARC | Domain | 268 | 344 | 1.9e-22 | 80.4 | NB-ARC domain |
XP_057789267.1 |
Pfam | PF00931 |
NB-ARC | Domain | 190 | 263 | 1.1e-21 | 77.9 | NB-ARC domain |
XP_057789267.1 |
Pfam | PF00931 |
NB-ARC | Domain | 268 | 344 | 1.1e-21 | 77.9 | NB-ARC domain |
XP_057789268.1 |
Pfam | PF00931 |
NB-ARC | Domain | 190 | 263 | 1.1e-21 | 77.9 | NB-ARC domain |
XP_057789268.1 |
Pfam | PF00931 |
NB-ARC | Domain | 268 | 344 | 1.1e-21 | 77.9 | NB-ARC domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。