Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005848

染色体: Chr01 坐标: 74436347-74437790 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005848
名称SmilChr01G005848
描述uncharacterized protein At2g27730, mitochondrial-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向74436347 - 74437790 / +

ID 对照

NCBI Gene IDLOC131006150
GeneID131006150
locus_tag-
NCBI NameLOC131006150
原始查询SmilChr01G005848

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述F1F0-ATPase inhibitor protein [Source:NCBI gene (formerly Entrezgene);Acc:830353]; symbol=AT5G04750; hit=AT5G04750; species=arabidopsis; confidence=low
产物F1F0-ATPase inhibitor protein [Source:NCBI gene (formerly Entrezgene);Acc:830353]; symbol=AT5G04750; hit=AT5G04750; species=arabidopsis; confidence=low
ArabidopsisAT5G04750 (AT5G04750)
F1F0-ATPase inhibitor protein [Source:NCBI gene (formerly Entrezgene);Acc:830353]
identity=65.5; qcov=0.674; evalue=1.41e-16; confidence=low
RiceOs02g0533800
-
identity=60.4; qcov=0.616; evalue=3.45e-13; confidence=low
GO-
KEGG-
PfamPF28671 (UMP2)
InterPro-
eggNOG-
NRGeneID:131006150

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057789304.1
2 Mitochondrion matrix 线粒体基质 1.00000 XP_057789304.1
3 Nucleus 细胞核 0.00000 XP_057789304.1
4 Chromosome 染色体 0.00000 XP_057789304.1
5 Centromere 着丝粒 0.00000 XP_057789304.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:74436642 G A EMS_canonical_SNV CDS_variant 1 C86
Chr1:74436708 G A EMS_canonical_SNV CDS_variant 1 A4
Chr1:74437335 G A EMS_canonical_SNV CDS_variant 2 B11,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057789304.1
87 aa
N
1
44
87
UMP2
C
PF28671 UMP2 28-81 aa
XP_057789305.1
86 aa
N
1
43
86
UMP2
C
PF28671 UMP2 28-78 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789304.1 Pfam PF28671 UMP2 Family 28 81 3.1e-13 50.7 Mitochondrial uncharacterised protein UMP2
XP_057789305.1 Pfam PF28671 UMP2 Family 28 78 3.5e-13 50.5 Mitochondrial uncharacterised protein UMP2

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057933321.1
TGCTGGGAGTGCTCGGAAAAGTTGCAATGAGCCGTCATTTTGAAATAGTGGAAAACTAAACGAAATATATCAATTTGTAAATAAGAAGTGATAATAAAATAAGAAGTGATAGTTATCCAAAGTATTATTATTATTATTAATATCATGAAGGTTGTAGAAGGCATTTAACATTTTCATATACATACACAAACAGCATAGAAGAACTGAAGAAAGCATCGCGGTTGATGACGCTGAGATCTGTCGTTTCGTGCAGTAGACTG...
XM_057933322.1
TATTATTATTATTAATATCATGAAGGTTGTAGAAGGCATTTAACATTTTCATATACATACACAAACAGCATAGAAGAACTGAAGAAAGCATCGCGGTTGATGACGCTGAGATCTGTCGTTTCGTGCAGTAGACTGTGTCGTTTAATGGAAGGCAGCTGGCGGCCGCCGGCGTCGAGCCTCCGCTATTTCAGCGAAAGCAAAGGGCGCGTGCTCAGTGAAGAAGAGCGCGCTATCGAGACTGTTTATATTCAGAAAATGGA...

CDS

2 records

下载 CDS FASTA
LOC131006150
ATGACGCTGAGATCTGTCGTTTCGTGCAGTAGACTGTGTCGTTTAATGGAAGGCAGCTGGCGGCCGCCGGCGTCGAGCCTCCGCTATTTCAGCGAAAGCAAAGGGCGCGTGCTCAGTGAAGAAGAGCGCGCTATCGAGACTGTTTATATTCAGAAAATGGAGAGGGAAAGGATGGAGAAGCTGAGGAGGAAGAAGGCTGAGCAAGAGAAAGCTGACAATGACAAGTCTGAAAAGAAAGCTGAAGAAGGTCCTCACAAGAG...
LOC131006150
ATGACGCTGAGATCTGTCGTTTCGTGCAGTAGACTGTGTCGTTTAATGGAAGGCAGCTGGCGGCCGCCGGCGTCGAGCCTCCGCTATTTCAGCGAAAGCAAAGGGCGCGTGCTCAGTGAAGAAGAGCGCGCTATCGAGACTGTTTATATTCAGAAAATGGAGAGGGAAAGGATGGAGAAGCTGAGGAGGAAGAAGGCTGAGCAAGAGAAAGCTGACAATGACAAGTCTGAAAAGGCTGAAGAAGGTCCTCACAAGAGCTG...

Protein

2 records

下载 Protein FASTA
XP_057789304.1
MTLRSVVSCSRLCRLMEGSWRPPASSLRYFSESKGRVLSEEERAIETVYIQKMERERMEKLRRKKAEQEKADNDKSEKKAEEGPHKS
XP_057789305.1
MTLRSVVSCSRLCRLMEGSWRPPASSLRYFSESKGRVLSEEERAIETVYIQKMERERMEKLRRKKAEQEKADNDKSEKAEEGPHKS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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