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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005858

染色体: Chr01 坐标: 74509077-74514896 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005858
名称SmilChr01G005858
描述receptor-like protein 9DC3
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向74509077 - 74514896 / -

ID 对照

NCBI Gene IDLOC131006159
GeneID131006159
locus_tag-
NCBI NameLOC131006159
原始查询SmilChr01G005858

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor-like protein 9DC3
产物receptor-like protein 9DC3
ArabidopsisAT5G25910 (RLP52)
receptor like protein 52 [Source:NCBI gene (formerly Entrezgene);Acc:832660]
identity=41.1; qcov=0.971; evalue=4.88e-104; confidence=medium
RiceOs01g0161000
-
identity=36.4; qcov=0.923; evalue=7.06e-91; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF00560 (LRR_1); PF13855 (LRR_8); PF24141 (LRR_ComC)
InterPro-
eggNOG-
NRGeneID:131006159

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057789315.1
2 Nucleus 细胞核 0.00000 XP_057789315.1
3 Chromosome 染色体 0.00000 XP_057789315.1
4 Centromere 着丝粒 0.00000 XP_057789315.1
5 Chromatin 染色质 0.00000 XP_057789315.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:74509239 G A EMS_canonical_SNV CDS_variant 5 A9,B103,B114,B39,C14
Chr1:74509332 G A EMS_canonical_SNV CDS_variant 5 A20,B20,B30,C6,C87
Chr1:74509361 C T EMS_canonical_SNV CDS_variant 2 B30,C6
Chr1:74509424 C T EMS_canonical_SNV CDS_variant 2 B30,C6
Chr1:74509605 C T EMS_canonical_SNV CDS_variant 1 B2
Chr1:74509661 C T EMS_canonical_SNV CDS_variant 1 C82
Chr1:74509732 TG T 1bp_deletion frameshift_variant 7 B131,B34,B71,C56,C75,C81,C83
Chr1:74509890 AT A 1bp_deletion frameshift_variant 4 A2,B51,B52,C23
Chr1:74509890 AT A 1bp_deletion CDS_variant 4 A2,B51,B52,C23
Chr1:74509899 ACG A 2bp_deletion frameshift_variant 4 A2,B51,B52,C23
Chr1:74509899 ACG A 2bp_deletion CDS_variant 4 A2,B51,B52,C23
Chr1:74510016 C T EMS_canonical_SNV CDS_variant 1 C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789315.1
591 aa
N
1
296
591
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_ComC
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
C
PF13855 LRR_8 4-62 aa PF00560 LRR_1 27-49 aa PF00560 LRR_1 51-72 aa PF00560 LRR_1 77-97 aa PF13855 LRR_8 77-135 aa PF24141 LRR_ComC 97-206 aa PF00560 LRR_1 101-122 aa PF00560 LRR_1 148-170 aa PF00560 LRR_1 173-194 aa PF00560 LRR_1 197-218 aa PF13855 LRR_8 245-304 aa PF00560 LRR_1 246-267 aa PF00560 LRR_1 320-337 aa PF00560 LRR_1 386-406 aa PF13855 LRR_8 386-443 aa PF00560 LRR_1 409-430 aa PF00560 LRR_1 433-454 aa
XP_057789316.1
536 aa
N
1
268
536
LRR_1
LRR_8
LRR_ComC
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
C
PF00560 LRR_1 22-42 aa PF13855 LRR_8 22-80 aa PF24141 LRR_ComC 42-138 aa PF00560 LRR_1 46-67 aa PF00560 LRR_1 93-115 aa PF00560 LRR_1 118-139 aa PF00560 LRR_1 142-163 aa PF13855 LRR_8 190-249 aa PF00560 LRR_1 191-212 aa PF00560 LRR_1 265-282 aa PF00560 LRR_1 331-351 aa PF13855 LRR_8 331-388 aa PF00560 LRR_1 354-375 aa PF00560 LRR_1 378-399 aa
XP_057789317.1
518 aa
N
1
259
518
LRR_1
LRR_8
LRR_ComC
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
C
PF00560 LRR_1 4-24 aa PF13855 LRR_8 4-62 aa PF24141 LRR_ComC 24-133 aa PF00560 LRR_1 28-49 aa PF00560 LRR_1 75-97 aa PF00560 LRR_1 100-121 aa PF00560 LRR_1 124-145 aa PF13855 LRR_8 172-231 aa PF00560 LRR_1 173-194 aa PF00560 LRR_1 247-264 aa PF00560 LRR_1 313-333 aa PF13855 LRR_8 313-370 aa PF00560 LRR_1 336-357 aa PF00560 LRR_1 360-381 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789315.1 Pfam PF13855 LRR_8 Repeat 4 62 2.2e-42 143.3 Leucine rich repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 27 49 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 51 72 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 77 97 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF13855 LRR_8 Repeat 77 135 2.2e-42 143.3 Leucine rich repeat
XP_057789315.1 Pfam PF24141 LRR_ComC Repeat 97 206 6.6e-16 59.5 EGF-like domain-containing protein ComC LRR domain
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 101 122 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 148 170 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 173 194 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 197 218 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF13855 LRR_8 Repeat 245 304 2.2e-42 143.3 Leucine rich repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 246 267 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 320 337 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 386 406 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF13855 LRR_8 Repeat 386 443 2.2e-42 143.3 Leucine rich repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 409 430 8.9e-50 156.6 Leucine Rich Repeat
XP_057789315.1 Pfam PF00560 LRR_1 Repeat 433 454 8.9e-50 156.6 Leucine Rich Repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 22 42 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF13855 LRR_8 Repeat 22 80 3.8e-34 117.0 Leucine rich repeat
XP_057789316.1 Pfam PF24141 LRR_ComC Repeat 42 138 5.2e-12 46.7 EGF-like domain-containing protein ComC LRR domain
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 46 67 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 93 115 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 118 139 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 142 163 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF13855 LRR_8 Repeat 190 249 3.8e-34 117.0 Leucine rich repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 191 212 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 265 282 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 331 351 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF13855 LRR_8 Repeat 331 388 3.8e-34 117.0 Leucine rich repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 354 375 3.8e-42 133.9 Leucine Rich Repeat
XP_057789316.1 Pfam PF00560 LRR_1 Repeat 378 399 3.8e-42 133.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 4 24 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF13855 LRR_8 Repeat 4 62 1.3e-35 121.6 Leucine rich repeat
XP_057789317.1 Pfam PF24141 LRR_ComC Repeat 24 133 1.4e-11 45.4 EGF-like domain-containing protein ComC LRR domain
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 28 49 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 75 97 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 100 121 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 124 145 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF13855 LRR_8 Repeat 172 231 1.3e-35 121.6 Leucine rich repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 173 194 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 247 264 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 313 333 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF13855 LRR_8 Repeat 313 370 1.3e-35 121.6 Leucine rich repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 336 357 1.7e-41 131.9 Leucine Rich Repeat
XP_057789317.1 Pfam PF00560 LRR_1 Repeat 360 381 1.7e-41 131.9 Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057933332.1
CGTTATACTTAACAATATGGAACTTGACTTTGATGACTTCATTATTCTCCAGGTACTATTCCGAAAGAGATTGGAAATCTTCATAATTTATGGTTCATGTGGTTGGGTTCCAACGAACTTAGCGGATCAATCCCGAGAGAAGTGGGGAACATGACAGCTCTTTCTGACTTACGGCTCGACAATAATAGTTTAAGTGGTATTAGAACTCTTTTAGCGAGTTAATTTCTTTTTTTGGGGATTCCCACAAACTTAGTGGAGCT...
XM_057933333.1
ATACTTAACAATATGGAACTTGACTTTGATGACTTCATTATTCTCCAGGTACTATTCCGAAAGAGATTGGAAATCTTCATAATTTATGGTTCATGTGGTTGGGTTCCAACGAACTTAGCGGATCAATCCCGAGAGAAGTGGGGAACATGACAGCTCTTTCTGACTTACGGCTCGACAATAATAGTTTAAGTGGTACTATTCCGAGAGAAATTGGGAACGTGGAAGCACTACAATATTTATACCTTGGAAACAATGGTTTA...

CDS

3 records

下载 CDS FASTA
LOC131006159
ATGTGGTTGGGTTCCAACGAACTTAGCGGATCAATCCCGAGAGAAGTGGGGAACATGACAGCTCTTTCTGACTTACGGCTCGACAATAATAGTTTAAGTGGTACTATTCCGAGAGAAATTGGGAACGTGGAAGCACTACAATATTTATACCTTGGAAACAATGGTTTAACCGGAGTTATTCCACAAGAGATACATCATCTTCATAATTTAATAGCGTTGGGCTTGAGTTTGAACAAGTTGTCAGGCACCTTGCCACCAAC...
LOC131006159
ATGACAGCTCTTGACGGGTTATTGCTCGACAATAATACTTTAAGTGGAGTTATTCCACAAGAGATACATCATCTTCATAATTTAACAGTATTGGACTTGAGTTCGAACAAGTTATCAGGCACCTTGCCACCAACCATTTTCAACATGTCTTCCTTGGCATGGATTGACTTATCAAGTAACACACTTAGCGGGGCATTGCCTTCAGAAATTGGGAACAAGAAAGCAGTACTAGAGTTTTTATCCCTTGAAAACAATGCTTT...

Protein

3 records

下载 Protein FASTA
XP_057789315.1
MTALDGLLLDNNTLSGVIPQEIHHLHNLTVLDLSSNKLSGTLPPTIFNMSSLAWIDLSSNTLSGALPSEIGNKKAVLEFLSLENNALTGTIPREIGNVEALQYLYLGNNGLTGVIPQEIHHLHNLIALGLSLNKLSGTLPPTIFNMSSLAWIDLSSNTLSGALPSEIGNMKALSTLLLENNALTGTIPSSICNLTSLGFLVLSNNTLEGTIPQCFGNLSKSLLIFHLNVNQFSGLIPSSFSKGCGLVSINLNGNKLQGPL...
XP_057789316.1
MWLGSNELSGSIPREVGNMTALSDLRLDNNSLSGTIPREIGNVEALQYLYLGNNGLTGVIPQEIHHLHNLIALGLSLNKLSGTLPPTIFNMSSLAWIDLSSNTLSGALPSEIGNMKALSTLLLENNALTGTIPSSICNLTSLGFLVLSNNTLEGTIPQCFGNLSKSLLIFHLNVNQFSGLIPSSFSKGCGLVSINLNGNKLQGPLPKSLINCGSLRGLDVGNNRIQDEFPFWMDGLPQLRVLVLRSNKFYGNMSIPSQTK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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