Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005859`

染色体: Chr01 坐标: 74514983-74518173 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005859`
名称	SmilChr01G005859
描述	probable leucine-rich repeat receptor-like protein kinase At1g35710
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74514983 - 74518173 / `-`

ID 对照

NCBI Gene ID	`LOC131013153`
GeneID	`131013153`
locus_tag	`-`
NCBI Name	`LOC131013153`
原始查询	`SmilChr01G005859`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable leucine-rich repeat receptor-like protein kinase At1g35710
产物	probable leucine-rich repeat receptor-like protein kinase At1g35710
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=38.3; qcov=0.759; evalue=6.99e-50; confidence=medium
Rice	`Os10g0375000` (YK19) - identity=38; qcov=0.836; evalue=4.2e-54; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8); PF24141 (LRR_ComC)
InterPro	-
eggNOG	-
NR	GeneID:131013153

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797177.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057797177.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057797177.1`
4	Nucleus	细胞核	0.00000	`XP_057797177.1`
5	Chromosome	染色体	0.00000	`XP_057797177.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74515017`	`AGG`	`A`	2bp_deletion	frameshift_variant	7	B33,B35,B53,B75,B84,C38,C85
`Chr1:74517430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B123,B137,B14,B84,B85
`Chr1:74517435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B24,C45,C68
`Chr1:74517468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B58,B74,C84
`Chr1:74517531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:74517546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:74517595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,C36,C81
`Chr1:74517599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,C42,C60
`Chr1:74517608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,C11,C34
`Chr1:74517617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C14,C46
`Chr1:74517623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B89,C64,C79
`Chr1:74517628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797177.1

365 aa

182

365

LRRNT_2

LRR_1

LRR_ComC

LRR_1

LRR_8

LRR_4

LRR_1

PF08263 LRRNT_2 51-91 aa PF00560 LRR_1 120-142 aa PF00560 LRR_1 145-164 aa PF00560 LRR_1 170-192 aa PF24141 LRR_ComC 174-324 aa PF00560 LRR_1 194-216 aa PF13855 LRR_8 194-253 aa PF12799 LRR_4 217-253 aa PF00560 LRR_1 218-240 aa PF00560 LRR_1 242-264 aa PF00560 LRR_1 266-287 aa PF00560 LRR_1 292-313 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797177.1`	Pfam	`PF08263`	LRRNT_2	Family	51	91	5.2e-11	43.3	Leucine rich repeat N-terminal domain
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	120	142	1.5e-30	99.3	Leucine Rich Repeat
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	145	164	1.5e-30	99.3	Leucine Rich Repeat
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	170	192	1.5e-30	99.3	Leucine Rich Repeat
`XP_057797177.1`	Pfam	`PF24141`	LRR_ComC	Repeat	174	324	1.8e-07	31.9	EGF-like domain-containing protein ComC LRR domain
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	194	216	1.5e-30	99.3	Leucine Rich Repeat
`XP_057797177.1`	Pfam	`PF13855`	LRR_8	Repeat	194	253	5.3e-22	78.1	Leucine rich repeat
`XP_057797177.1`	Pfam	`PF12799`	LRR_4	Repeat	217	253	3.8e-20	72.2	Leucine Rich repeats (2 copies)
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	218	240	1.5e-30	99.3	Leucine Rich Repeat
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	242	264	1.5e-30	99.3	Leucine Rich Repeat
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	266	287	1.5e-30	99.3	Leucine Rich Repeat
`XP_057797177.1`	Pfam	`PF00560`	LRR_1	Repeat	292	313	1.5e-30	99.3	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941194.1
CATCATTAATCCTTCCCATTTGCCCATCATATCCACACACACACACTATATATACATGTATATGGATTTCATAGTTCAATATTCTAAAAAATTACTACTGTCAAAATCTAGCCAAAAAATGCAAAAATCTCCCCATTTTCTCATCCTTACACTACTCTTACCAATCCATTATTTGATGGATTATAGTTCAGCCAAAAACGATATCAACACTGATCGTTCTTCACTTCTCGCCTTAAAATCTCAAATCACTTTAGATCCTC...

CDS

1 records

下载 CDS FASTA

LOC131013153
ATGTATATGGATTTCATAGTTCAATATTCTAAAAAATTACTACTGTCAAAATCTAGCCAAAAAATGCAAAAATCTCCCCATTTTCTCATCCTTACACTACTCTTACCAATCCATTATTTGATGGATTATAGTTCAGCCAAAAACGATATCAACACTGATCGTTCTTCACTTCTCGCCTTAAAATCTCAAATCACTTTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTGAAGCCAGTGTTTGCAGTTGGATCGG...

Protein

1 records

下载 Protein FASTA

XP_057797177.1
MYMDFIVQYSKKLLLSKSSQKMQKSPHFLILTLLLPIHYLMDYSSAKNDINTDRSSLLALKSQITLDPQNILTQNWSTEASVCSWIGVTCDSRYNRVTQLNISSMGLVGTLPPEIGNLSSLVSLDVNENSFHGPIPPSIFNMSFLEVLELRNNSLSSSLPLDMCKHNLHRLKRLRISYNKMYGEIPSSLEKCSQLEYLSLVNNTFTGFVPTEIGNLTKLQELYLGVNKLTGVIPQEIHHLHNLTVLDLSSNKLSGTLPPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器