Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005871`

染色体: Chr01 坐标: 74645371-74650077 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005871`
名称	SmilChr01G005871
描述	LRR receptor-like serine/threonine-protein kinase RGI5
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74645371 - 74650077 / `-`

ID 对照

NCBI Gene ID	`LOC131006165`
GeneID	`131006165`
locus_tag	`-`
NCBI Name	`LOC131006165`
原始查询	`SmilChr01G005871`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase RGI5
产物	LRR receptor-like serine/threonine-protein kinase RGI5
Arabidopsis	`AT1G17230` (AT1G17230) Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838294] identity=35.5; qcov=1; evalue=1.46e-100; confidence=medium
Rice	`Os02g0211900` - identity=37.1; qcov=1.05; evalue=1.03e-99; confidence=medium
GO	GO:0005515 (protein binding); GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF24141 (LRR_ComC)
InterPro	-
eggNOG	-
NR	GeneID:131006165

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057789324.1`
2	Cell wall	细胞壁	0.20000	`XP_057789324.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057789324.1`
4	Nucleus	细胞核	0.00000	`XP_057789324.1`
5	Chromosome	染色体	0.00000	`XP_057789324.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74645564`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B73
`Chr1:74645564`	`TA`	`T`	1bp_deletion	CDS_variant	1	B73
`Chr1:74645579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,C78
`Chr1:74645587`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:74645682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,B86
`Chr1:74645691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr1:74645695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr1:74645697`	`A`	`AT`	1bp_insertion	frameshift_variant	6	A11,B30,B55,C38,C46,D1
`Chr1:74645704`	`C`	`T`	EMS_canonical_SNV	stop_gained	9	B102,B42,B46,B72,B86,B93,C21,C40,C58
`Chr1:74645709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C15,C2,C42,C47,C71
`Chr1:74645714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B99,C21,D10
`Chr1:74645723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C15,C42,C71,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789324.1

569 aa

284

569

LRRNT_2

LRR_1

LRR_8

LRR_ComC

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 30-70 aa PF00560 LRR_1 99-121 aa PF00560 LRR_1 124-143 aa PF00560 LRR_1 149-171 aa PF13855 LRR_8 149-208 aa PF24141 LRR_ComC 152-287 aa PF00560 LRR_1 173-195 aa PF13855 LRR_8 173-232 aa PF00560 LRR_1 197-219 aa PF00560 LRR_1 221-243 aa PF00560 LRR_1 245-266 aa PF00560 LRR_1 271-292 aa PF00560 LRR_1 294-316 aa PF00560 LRR_1 342-364 aa PF00560 LRR_1 390-412 aa PF00560 LRR_1 415-435 aa PF00560 LRR_1 440-461 aa PF00560 LRR_1 463-485 aa PF00560 LRR_1 511-533 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789324.1`	Pfam	`PF08263`	LRRNT_2	Family	30	70	1e-10	42.4	Leucine rich repeat N-terminal domain
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	99	121	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	124	143	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	149	171	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF13855`	LRR_8	Repeat	149	208	3.6e-43	145.9	Leucine rich repeat
`XP_057789324.1`	Pfam	`PF24141`	LRR_ComC	Repeat	152	287	1.1e-14	55.6	EGF-like domain-containing protein ComC LRR domain
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	173	195	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF13855`	LRR_8	Repeat	173	232	3.6e-43	145.9	Leucine rich repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	197	219	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	221	243	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	245	266	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	271	292	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	294	316	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	342	364	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	390	412	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	415	435	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	440	461	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	463	485	3.8e-62	193.4	Leucine Rich Repeat
`XP_057789324.1`	Pfam	`PF00560`	LRR_1	Repeat	511	533	3.8e-62	193.4	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933341.1
TATAAAAATAGAGAATATCTTCTACTTTTGCATGTTATTCTACCACTTCAAATAAACAAACAGGTTTTGTTGTTTATTCAACTGACGTAGCCCTCTGATCACGGCCAAAACTTATAATGCTATTTTAATATGAATATTAGGGTCATTTTTTAAGATTTGGGTTAGACTCAATCTCCCAAATCGAAGAGAAAGTAGCTTTCCATATAAATAGTCTTAGTTGCTTTTGCCTCCAAAAATCACTCTTTATAGTTCCACAATTA...

CDS

1 records

下载 CDS FASTA

LOC131006165
ATGCCAAAATCTCCCCATTTTCTCATCCTTGCACTACTCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAACCGATATCAACACCGATCGTTCTTCCCTTCTCGCCTTAAAATCCCAAATCACATTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACCGAAGCCAGTGTTTGCAGTTGGATCGGAGTTACTTGTGATTCACGTTACAATAGGGTTACTCAGTTGAATATATCGTCCATGGGTCTTGT...

Protein

1 records

下载 Protein FASTA

XP_057789324.1
MPKSPHFLILALLLPIHYLMDYSSAKTDINTDRSSLLALKSQITLDPQNILTQNWSTEASVCSWIGVTCDSRYNRVTQLNISSMGLVGTLPPEIGNLSSLVSLDVNENSFHGPIPPSIFNMSFLEVLELRNNNLSTSLPLDMCKRNLHSLKRLHISYNEMYGEIPSSLGQCSQLEYLSLYNNNFTGFVPTEIGNLTKLQTLDLGENKLTGVIPQEIHHLHNLRVLDLSLNKLSDTLPPTIFNMSSLAWIDLSSNTLSGAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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