Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005873`

染色体: Chr01 坐标: 74682250-74684486 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005873`
名称	SmilChr01G005873
描述	F-box/LRR-repeat protein At3g26922-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74682250 - 74684486 / `+`

ID 对照

NCBI Gene ID	`LOC131006167`
GeneID	`131006167`
locus_tag	`-`
NCBI Name	`LOC131006167`
原始查询	`SmilChr01G005873`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein At3g26922-like
产物	F-box/LRR-repeat protein At3g26922-like
Arabidopsis	`AT5G56370` (AT5G56370) F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835738] identity=27.3; qcov=0.681; evalue=5.26e-17; confidence=low
Rice	`Os01g0596100` (OsFbox025) - identity=22.1; qcov=0.681; evalue=2.79e-11; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131006167

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789326.1`
2	Cytoplasm	细胞质	0.20000	`XP_057789326.1`
3	Chromosome	染色体	0.00000	`XP_057789328.1`
4	Centromere	着丝粒	0.00000	`XP_057789328.1`
5	Chromatin	染色质	0.00000	`XP_057789328.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74682489`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B100
`Chr1:74682489`	`CT`	`C`	1bp_deletion	CDS_variant	1	B100
`Chr1:74682499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr1:74682503`	`A`	`AT`	1bp_insertion	frameshift_variant	2	A25,B140
`Chr1:74682503`	`A`	`AT`	1bp_insertion	CDS_variant	2	A25,B140
`Chr1:74682509`	`C`	`T`	EMS_canonical_SNV	stop_gained	33	A13,A14,A7,B102,B118,B12,B122,B129,B13,B135,B136,B138,B16,B20,B26,B29,B53,B61,B73,B93,B97,C18,C24,C38,C43,C5,C54,C61,C70,C74,C9,D10,D2
`Chr1:74682537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr1:74682587`	`T`	`TGG`	2bp_insertion	frameshift_variant	24	A13,A14,A7,B12,B122,B129,B13,B135,B136,B138,B16,B20,B53,B73,B93,B97,C18,C24,C5,C54,C70,C74,D10,D2
`Chr1:74682618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B29,B79,B90,B92
`Chr1:74682620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr1:74682635`	`C`	`T`	EMS_canonical_SNV	stop_gained	25	A14,A7,B12,B125,B129,B13,B135,B136,B138,B20,B29,B53,B73,B79,B90,B92,B93,B97,C18,C24,C5,C54,C70,C74,D10
`Chr1:74682677`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789326.1

467 aa

234

467

F-box

LRR_At5g56370

PF00646 F-box 6-47 aa PF24758 LRR_At5g56370 101-219 aa

XP_057789327.1

467 aa

234

467

F-box

LRR_At5g56370

PF00646 F-box 6-47 aa PF24758 LRR_At5g56370 101-219 aa

XP_057789328.1

392 aa

196

392

F-box

LRR_At5g56370

PF00646 F-box 6-47 aa PF24758 LRR_At5g56370 101-219 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789326.1`	Pfam	`PF00646`	F-box	Domain	6	47	3.5e-09	36.9	F-box domain
`XP_057789326.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	101	219	8.3e-13	49.2	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057789327.1`	Pfam	`PF00646`	F-box	Domain	6	47	3.5e-09	36.9	F-box domain
`XP_057789327.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	101	219	8.3e-13	49.2	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057789328.1`	Pfam	`PF00646`	F-box	Domain	6	47	2.9e-09	37.2	F-box domain
`XP_057789328.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	101	219	1e-10	42.4	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933343.1
GGTGTTTGATCATTTCCCCAAATGAATCATTTCCTAAAATCAATAGAGTTTGAGGCCGCTGCAACTCATACGATCTGATAAATGTTTTGAGATTTTGTGGATGAAGAAAACGGAAAGATGAGCTGCGATCGACTCAGTGAGTTGCCCGACTCTTTAATTTTCGATATTTTTCAGTTTCTGCCGATTTCGGATGTTGTTCGGACAACATTTCTCTCCAAGCGATGGAATAACCTCTGGACCACCTTCCCTTTTCTCATTTT...

XM_057933344.1
TTTTTGTTTGGTTTCTTAAATTTCAATTCGTGGATAATTGATTGTGCTTGTGATCTTCAGATTTTGTGGATGAAGAAAACGGAAAGATGAGCTGCGATCGACTCAGTGAGTTGCCCGACTCTTTAATTTTCGATATTTTTCAGTTTCTGCCGATTTCGGATGTTGTTCGGACAACATTTCTCTCCAAGCGATGGAATAACCTCTGGACCACCTTCCCTTTTCTCATTTTCAATGATCGTGAGCTGATAACTGATTCTGAT...

CDS

3 records

下载 CDS FASTA

LOC131006167
ATGAGCTGCGATCGACTCAGTGAGTTGCCCGACTCTTTAATTTTCGATATTTTTCAGTTTCTGCCGATTTCGGATGTTGTTCGGACAACATTTCTCTCCAAGCGATGGAATAACCTCTGGACCACCTTCCCTTTTCTCATTTTCAATGATCGTGAGCTGATAACTGATTCTGATAAATTTCGAAACTTCATTAATGGGGTCGTGAATTCTTGGAGAGGGATCAAGATTACGGGATTAAGTTTTGATTTAGTCGGTTCCGA...

Protein

3 records

下载 Protein FASTA

XP_057789326.1
MSCDRLSELPDSLIFDIFQFLPISDVVRTTFLSKRWNNLWTTFPFLIFNDRELITDSDKFRNFINGVVNSWRGIKITGLSFDLVGSDPKLKEPYPSDNDIASWMHFATEKNVEALIYYIAHQFEVPQFLYSCSSLKVLKLILWYPQIHGNVQWDRLKKLTIVCIGFTQNTIDQILRGSPRLELFDLTLGGQSSADTREYCSIDLSIRSSSLMHLILCYKKDGGNIDPELRIWTPNLQILYIGGIPYRKCLLINVSSLLKV...

XP_057789327.1
MSCDRLSELPDSLIFDIFQFLPISDVVRTTFLSKRWNNLWTTFPFLIFNDRELITDSDKFRNFINGVVNSWRGIKITGLSFDLVGSDPKLKEPYPSDNDIASWMHFATEKNVEALIYYIAHQFEVPQFLYSCSSLKVLKLILWYPQIHGNVQWDRLKKLTIVCIGFTQNTIDQILRGSPRLELFDLTLGGQSSADTREYCSIDLSIRSSSLMHLILCYKKDGGNIDPELRIWTPNLQILYIGGIPYRKCLLINVSSLLKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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