Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005874`

染色体: Chr01 坐标: 74686291-74699127 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005874`
名称	SmilChr01G005874
描述	receptor-like protein 52
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74686291 - 74699127 / `-`

ID 对照

NCBI Gene ID	`LOC131006164`
GeneID	`131006164`
locus_tag	`-`
NCBI Name	`LOC131006164`
原始查询	`SmilChr01G005874`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 52
产物	receptor-like protein 52
Arabidopsis	`AT5G25910` (RLP52) receptor like protein 52 [Source:NCBI gene (formerly Entrezgene);Acc:832660] identity=35.8; qcov=0.963; evalue=3.64e-149; confidence=medium
Rice	`Os01g0160200` - identity=34.7; qcov=0.981; evalue=7.22e-120; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131006164

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789322.1`
2	Nucleus	细胞核	0.00000	`XP_057789322.1`
3	Chromosome	染色体	0.00000	`XP_057789322.1`
4	Centromere	着丝粒	0.00000	`XP_057789322.1`
5	Chromatin	染色质	0.00000	`XP_057789322.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74686524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B11
`Chr1:74686536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:74686650`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B29,C28,C38,C49,C77
`Chr1:74686650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,C28,C38,C49,C77
`Chr1:74686674`	`A`	`AT`	1bp_insertion	frameshift_variant	9	A1,A4,B103,B125,B28,B7,C52,C57,C74
`Chr1:74686682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:74686732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B131,B94,C9
`Chr1:74686898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr1:74687017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B11
`Chr1:74687065`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C8
`Chr1:74687065`	`GA`	`G`	1bp_deletion	CDS_variant	1	C8
`Chr1:74687115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789322.1

853 aa

426

853

LRRNT_2

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 31-71 aa PF00560 LRR_1 124-144 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 201-221 aa PF00560 LRR_1 296-317 aa PF00560 LRR_1 343-365 aa PF00560 LRR_1 415-436 aa PF00560 LRR_1 438-460 aa PF00560 LRR_1 462-484 aa PF00560 LRR_1 511-533 aa PF13855 LRR_8 511-570 aa PF00560 LRR_1 586-603 aa PF00560 LRR_1 653-673 aa PF00560 LRR_1 675-696 aa PF00560 LRR_1 700-721 aa

XP_057789323.1

829 aa

414

829

LRRNT_2

LRR_1

LRR_6

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 31-71 aa PF00560 LRR_1 124-144 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 201-221 aa PF00560 LRR_1 296-317 aa PF00560 LRR_1 391-413 aa PF00560 LRR_1 416-437 aa PF13516 LRR_6 437-453 aa PF00560 LRR_1 439-461 aa PF00560 LRR_1 463-485 aa PF00560 LRR_1 513-534 aa PF00560 LRR_1 654-674 aa PF13855 LRR_8 654-711 aa PF00560 LRR_1 676-696 aa PF00560 LRR_1 701-722 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789322.1`	Pfam	`PF08263`	LRRNT_2	Family	31	71	3.4e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	124	144	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	174	196	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	201	221	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	296	317	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	343	365	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	415	436	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	438	460	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	462	484	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	511	533	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF13855`	LRR_8	Repeat	511	570	1.3e-36	124.8	Leucine rich repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	586	603	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	653	673	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	675	696	4e-63	196.3	Leucine Rich Repeat
`XP_057789322.1`	Pfam	`PF00560`	LRR_1	Repeat	700	721	4e-63	196.3	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF08263`	LRRNT_2	Family	31	71	3.1e-09	37.7	Leucine rich repeat N-terminal domain
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	124	144	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	174	196	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	201	221	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	296	317	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	391	413	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	416	437	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF13516`	LRR_6	Repeat	437	453	8.9e-08	32.3	Leucine Rich repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	439	461	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	463	485	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	513	534	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	654	674	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF13855`	LRR_8	Repeat	654	711	2.2e-39	133.7	Leucine rich repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	676	696	3.4e-63	196.6	Leucine Rich Repeat
`XP_057789323.1`	Pfam	`PF00560`	LRR_1	Repeat	701	722	3.4e-63	196.6	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933340.1
ACATTTATAGATACCGTAGTTCAATATTCTAAAAAATCATCAAGCCAAAAGAATGGAAAAATCTCCCCATCTTCTCATCCTTGCACTACTGATCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAACCGACATCAACACTGATCGTTCTTCACTTTTCGCCTTAAAATCTCGAATCACTTTAGATCCTCAAAATATATTGACCAAAAATTGGAGCACCAAAGCCAGTGTTTGCAGTTGGATCGGAGTTACTT...

XM_057933339.1
ATTTATAGATACCGTAGTTCAATATTCTAAAAAATCATCAAGCCAAAAGAATGGAAAAATCTCCCCATCTTCTCATCCTTGCACTACTGATCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAACCGACATCAACACTGATCGTTCTTCACTTTTCGCCTTAAAATCTCGAATCACTTTAGATCCTCAAAATATATTGACCAAAAATTGGAGCACCAAAGCCAGTGTTTGCAGTTGGATCGGAGTTACTTGT...

CDS

2 records

下载 CDS FASTA

LOC131006164
ATGGAAAAATCTCCCCATCTTCTCATCCTTGCACTACTGATCTTACCAATCCATTATTTGATGGATTATAGCTCAGCCAAAACCGACATCAACACTGATCGTTCTTCACTTTTCGCCTTAAAATCTCGAATCACTTTAGATCCTCAAAATATATTGACCAAAAATTGGAGCACCAAAGCCAGTGTTTGCAGTTGGATCGGAGTTACTTGTAATTCACGCTACAGTAGGGTTACTCAGTTGAACATATCGTACATGGGTCT...

Protein

2 records

下载 Protein FASTA

XP_057789322.1
MEKSPHLLILALLILPIHYLMDYSSAKTDINTDRSSLFALKSRITLDPQNILTKNWSTKASVCSWIGVTCNSRYSRVTQLNISYMGLVGTLPPEIGNLSSLVSLDANENSFHGPIPASIFNMSSLEVLSLKNNSLSSSLPLDMCKHNLGRLKILRISYNEMYGEIPSSLGQCSQLEYLSLFHNNFIGFVPREIGNLTKLHEVLNLGENQLTGEIPEEIGGLTNLEGLRMRSNKLKGPLPSTIFTMTSLQYMDFAFNELSG...

XP_057789323.1
MEKSPHLLILALLILPIHYLMDYSSAKTDINTDRSSLFALKSRITLDPQNILTKNWSTKASVCSWIGVTCNSRYSRVTQLNISYMGLVGTLPPEIGNLSSLVSLDANENSFHGPIPASIFNMSSLEVLSLKNNSLSSSLPLDMCKHNLGRLKILRISYNEMYGEIPSSLGQCSQLEYLSLFHNNFIGFVPREIGNLTKLHEVLNLGENQLTGEIPEEIGGLTNLEGLRMRSNKLKGPLPSTIFTMTSLQYMDFAFNELSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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