Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005877`

染色体: Chr01 坐标: 74711399-74715640 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005877`
名称	SmilChr01G005877
描述	uncharacterized SmilChr01G005877
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74711399 - 74715640 / `+`

ID 对照

NCBI Gene ID	`LOC131013184`
GeneID	`131013184`
locus_tag	`-`
NCBI Name	`LOC131013184`
原始查询	`SmilChr01G005877`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	PPPDE thiol peptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829328]; symbol=AT4G31980; hit=AT4G31980; species=arabidopsis; confidence=low
产物	PPPDE thiol peptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829328]; symbol=AT4G31980; hit=AT4G31980; species=arabidopsis; confidence=low
Arabidopsis	`AT4G31980` (AT4G31980) PPPDE thiol peptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829328] identity=34; qcov=0.562; evalue=2.01e-57; confidence=low
Rice	`Os01g0562600` - identity=31.2; qcov=0.537; evalue=2.33e-45; confidence=low
GO	-
KEGG	-
Pfam	PF03140 (DUF247)
InterPro	-
eggNOG	-
NR	GeneID:131013184

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057797224.1`
2	Cytoplasm	细胞质	0.40000	`XP_057797224.1`
3	Cell membrane	细胞膜	0.20000	`XP_057797224.1`
4	Nucleus	细胞核	0.00000	`XP_057797224.1`
5	Chromosome	染色体	0.00000	`XP_057797224.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74711410`	`ATT`	`A`	2bp_deletion	frameshift_variant	2	B2,D6
`Chr1:74711410`	`ATT`	`A`	2bp_deletion	CDS_variant	2	B2,D6
`Chr1:74711428`	`T`	`TCA`	2bp_insertion	frameshift_variant	2	B2,D6
`Chr1:74711428`	`T`	`TCA`	2bp_insertion	CDS_variant	2	B2,D6
`Chr1:74711429`	`TTG`	`T`	2bp_deletion	frameshift_variant	2	B2,D6
`Chr1:74711429`	`TTG`	`T`	2bp_deletion	CDS_variant	2	B2,D6
`Chr1:74711446`	`TG`	`T`	1bp_deletion	frameshift_variant	3	B2,C37,D6
`Chr1:74711446`	`TG`	`T`	1bp_deletion	CDS_variant	3	B2,C37,D6
`Chr1:74711451`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B2,C37,D6
`Chr1:74711451`	`TC`	`T`	1bp_deletion	CDS_variant	3	B2,C37,D6
`Chr1:74711457`	`AG`	`A`	1bp_deletion	frameshift_variant	18	A14,B136,B138,B31,B44,B45,B59,B61,B67,B72,B73,C46,C52,C58,C7,C73,C8,C85
`Chr1:74711459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,C37,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797224.1

758 aa

379

758

DUF247

PF03140 DUF247 52-201 aa PF03140 DUF247 216-283 aa PF03140 DUF247 382-753 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797224.1`	Pfam	`PF03140`	DUF247	Family	52	201	2e-170	568.2	Plant protein of unknown function
`XP_057797224.1`	Pfam	`PF03140`	DUF247	Family	216	283	2e-170	568.2	Plant protein of unknown function
`XP_057797224.1`	Pfam	`PF03140`	DUF247	Family	382	753	2e-170	568.2	Plant protein of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941241.1
ATGTTTTTGGAATTAGTACATTTTGAAACTTTGGCATATTTCTTGGCTGAGTTCTTGAAGGTTTCACAGGCGTCAAATGGAGAAGACAGTGTGGCTGTTGCAATCCAAGGTTTGATCAAGAATTTGAGCAACACTACTCAACCTAAGCCCAAAATATTCAAAGTGGATGATCGCTTGCGCAAGGTGAATGCAAACGACTATGAGCCGAGGATCGTGGCTCTCGGCCCCATCCATCGAGGGAAACCTCATCTCGAGGCGAT...

CDS

1 records

下载 CDS FASTA

LOC131013184
ATGTTTTTGGAATTAGTACATTTTGAAACTTTGGCATATTTCTTGGCTGAGTTCTTGAAGGTTTCACAGGCGTCAAATGGAGAAGACAGTGTGGCTGTTGCAATCCAAGGTTTGATCAAGAATTTGAGCAACACTACTCAACCTAAGCCCAAAATATTCAAAGTGGATGATCGCTTGCGCAAGGTGAATGCAAACGACTATGAGCCGAGGATCGTGGCTCTCGGCCCCATCCATCGAGGGAAACCTCATCTCGAGGCGAT...

Protein

1 records

下载 Protein FASTA

XP_057797224.1
MFLELVHFETLAYFLAEFLKVSQASNGEDSVAVAIQGLIKNLSNTTQPKPKIFKVDDRLRKVNANDYEPRIVALGPIHRGKPHLEAMEQHKLRYLQQLLRRRDDLTIAKQVQKVSEKTEMALQCYSTPLNVDADEFVRMLLLDGCFLIELVRRHVQVSEASTEKDPVFEPTTLSQITHDLMLFENQLPFSLNHLFNMIKTEHLCFQLKLFTQSENNLLTFKAGVLKFPPLQVSGKTESLLRNLMAYEQLCLDDDHPKHVT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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