当前解析结果
SmilChr01G005881| 统一新 Gene ID | SmilChr01G005881 |
|---|---|
| 名称 | SmilChr01G005881 |
| 描述 | wall-associated receptor kinase 17-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74743185 - 74744273 / - |
| NCBI Gene ID | LOC131013196 |
|---|---|
| GeneID | 131013196 |
| locus_tag | - |
| NCBI Name | LOC131013196 |
| 原始查询 | SmilChr01G005881 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase 17-like |
| 产物 | wall-associated receptor kinase 17-like |
| Arabidopsis | AT1G17910 (AT1G17910)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838370] identity=29.2; qcov=1.05; evalue=2.6e-25; confidence=low |
| Rice | Os12g0614851 (OsRLCK374)- identity=31.3; qcov=0.892; evalue=7.15e-30; confidence=low |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013196 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797248.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797248.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797248.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797248.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797248.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74743193 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A22,B101,B60,B68,B74,B97,C18,C74,D5 |
Chr1:74743271 |
AT |
A |
1bp_deletion | frameshift_variant | 13 | B112,B136,B140,B31,B44,B45,B61,B67,B78,C46,C52,C7,C72 |
Chr1:74743459 |
CT |
* |
1bp_deletion | CDS_variant | 4 | B60,C30,C56,C83 |
Chr1:74743460 |
T |
TC |
1bp_insertion | frameshift_variant | 16 | A16,A25,B117,B120,B15,B25,B26,B36,B52,B6,B76,C20,C38,C43,C57,C87 |
Chr1:74743533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B84,C3,C60 |
Chr1:74743551 |
CG |
C |
1bp_deletion | frameshift_variant | 12 | A14,B136,B19,B31,B44,B45,B61,B73,C46,C52,C7,C72 |
Chr1:74743599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,D3 |
Chr1:74743632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr1:74743712 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B43,B93 |
Chr1:74743712 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B43,B93 |
Chr1:74743757 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B124 |
Chr1:74743757 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B124 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。