当前解析结果
SmilChr01G005883| 统一新 Gene ID | SmilChr01G005883 |
|---|---|
| 名称 | SmilChr01G005883 |
| 描述 | uncharacterized SmilChr01G005883 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74756461 - 74757655 / - |
| NCBI Gene ID | LOC131006177 |
|---|---|
| GeneID | 131006177 |
| locus_tag | - |
| NCBI Name | LOC131006177 |
| 原始查询 | SmilChr01G005883 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Integral membrane Yip1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824442]; symbol=AT3G52760; hit=AT3G52760; species=arabidopsis; confidence=high |
| 产物 | Integral membrane Yip1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824442]; symbol=AT3G52760; hit=AT3G52760; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G52760 (AT3G52760)Integral membrane Yip1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824442] identity=58.6; qcov=1.05; evalue=1.56e-98; confidence=high |
| Rice | Os03g0289200- identity=57.3; qcov=1.06; evalue=2.02e-82; confidence=high |
| GO | GO:0005802 (trans-Golgi network); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0016020 (membrane); GO:0048280 (vesicle fusion with Golgi apparatus) |
| KEGG | - |
| Pfam | PF04893 (Yip1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006177 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057789338.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057789338.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057789338.1 |
| 4 | Cis-golgi network | Cis-golgi network | 0.40000 | XP_057789338.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057789338.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74756695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B120,B18,B36,B52 |
Chr1:74756836 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:74756908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,A22,B61,B71 |
Chr1:74757010 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B40 |
Chr1:74757010 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B40 |
Chr1:74757025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:74757031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B13,B24 |
Chr1:74757042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr1:74757070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B45,C19,C63 |
Chr1:74757153 |
G |
A |
EMS_canonical_SNV | stop_gained | 54 | A14,A18,A2,A4,A5,B10,B106,B113,B114,B119,B120,B121,B130,B19,B2,B20,B28,B3,B30,B37,B38,B39,B41,B44,B47,B50,B51,B63,B72,B75,B83,B84,B91,B92,B93,B97,C10,C11,C21,C22,C37,C46,C48,C53,C67,C68,C73,C76,C78,D11,D4,D6,D8,D9 |
Chr1:74757160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr1:74757162 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A20,A5,B102,B106,B110,B111,B113,B117,B125,B13,B132,B50,B63,B71,B88,B89,B94,C16,C24,C27,C28,C35,C36,C62,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789338.1PF04893
Yip1 93-237 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789338.1 |
Pfam | PF04893 |
Yip1 | Domain | 93 | 237 | 2.7e-10 | 41.1 | Yip1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。