当前解析结果
SmilChr01G005886| 统一新 Gene ID | SmilChr01G005886 |
|---|---|
| 名称 | SmilChr01G005886 |
| 描述 | receptor-like protein 52 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74774017 - 74848538 / + |
| NCBI Gene ID | LOC131006179 |
|---|---|
| GeneID | 131006179 |
| locus_tag | - |
| NCBI Name | LOC131006179 |
| 原始查询 | SmilChr01G005886 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 52 |
| 产物 | receptor-like protein 52 |
| Arabidopsis | AT1G71400 (RLP12)receptor like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:843481] identity=36.1; qcov=1.03; evalue=6.92e-146; confidence=medium |
| Rice | Os12g0222900- identity=35.6; qcov=0.983; evalue=2.93e-119; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006179 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789340.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789340.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789340.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789340.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789340.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74774129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B9,C26 |
Chr1:74774195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:74774218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr1:74774293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B54,B55,C8 |
Chr1:74774313 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A15,A7,B4,B61,B64,B76,B91,B94,C36,C43 |
Chr1:74774317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B73 |
Chr1:74774351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:74774404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B89,C66,C79 |
Chr1:74774432 |
A |
ATG |
2bp_insertion | stop_gained,frameshift_variant | 64 | A13,A21,A8,B10,B106,B113,B114,B115,B117,B118,B119,B121,B126,B128,B131,B132,B139,B20,B26,B33,B34,B54,B56,B57,B62,B63,B64,B69,B71,B74,B77,B79,B8,B84,B94,B99,C1,C13,C21,C26,C3,C30,C32,C34,C36,C39,C43,C45,C58,C64,C66,C68,C7,C74,C76,C79,C81,C82,C83,C84,C86,C87,D2,D9 |
Chr1:74774458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B58,B74,B91,C20,C55 |
Chr1:74774459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr1:74774530 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789340.1PF08263
LRRNT_2 31-71 aa
PF00560
LRR_1 100-122 aa
PF23598
LRR_14 150-279 aa
PF00560
LRR_1 152-174 aa
PF00560
LRR_1 176-198 aa
PF00560
LRR_1 200-222 aa
PF00560
LRR_1 224-246 aa
PF23598
LRR_14 265-377 aa
PF00560
LRR_1 297-318 aa
PF00560
LRR_1 440-462 aa
PF23598
LRR_14 451-571 aa
PF00560
LRR_1 488-510 aa
PF00560
LRR_1 536-558 aa
PF00560
LRR_1 609-631 aa
PF00560
LRR_1 634-654 aa
PF13855
LRR_8 634-693 aa
PF00560
LRR_1 658-680 aa
PF00560
LRR_1 733-750 aa
PF00560
LRR_1 798-818 aa
PF13855
LRR_8 798-855 aa
PF00560
LRR_1 820-840 aa
PF13516
LRR_6 845-858 aa
PF00560
LRR_1 845-866 aa
XP_057789341.1PF08263
LRRNT_2 31-71 aa
PF00560
LRR_1 100-122 aa
PF23598
LRR_14 150-279 aa
PF00560
LRR_1 152-174 aa
PF00560
LRR_1 176-198 aa
PF00560
LRR_1 200-222 aa
PF00560
LRR_1 224-246 aa
PF23598
LRR_14 266-377 aa
PF00560
LRR_1 297-318 aa
PF23598
LRR_14 433-519 aa
PF00560
LRR_1 440-462 aa
PF00560
LRR_1 488-510 aa
PF00560
LRR_1 513-534 aa
PF00560
LRR_1 537-558 aa
PF00560
LRR_1 560-582 aa
PF00560
LRR_1 586-605 aa
PF13855
LRR_8 586-644 aa
PF00560
LRR_1 609-631 aa
PF00560
LRR_1 684-701 aa
PF00560
LRR_1 749-769 aa
PF00560
LRR_1 771-792 aa
PF13516
LRR_6 796-809 aa
PF00560
LRR_1 796-817 aa
XP_057789342.1PF08263
LRRNT_2 31-71 aa
PF00560
LRR_1 100-122 aa
PF23598
LRR_14 150-255 aa
PF00560
LRR_1 152-174 aa
PF00560
LRR_1 176-198 aa
PF00560
LRR_1 200-221 aa
PF23598
LRR_14 236-329 aa
PF00560
LRR_1 249-270 aa
PF23598
LRR_14 387-522 aa
PF00560
LRR_1 392-414 aa
PF00560
LRR_1 440-462 aa
PF00560
LRR_1 488-510 aa
PF00560
LRR_1 561-583 aa
PF00560
LRR_1 586-606 aa
PF13855
LRR_8 586-645 aa
PF00560
LRR_1 610-632 aa
PF00560
LRR_1 685-702 aa
PF00560
LRR_1 750-770 aa
PF13855
LRR_8 750-807 aa
PF00560
LRR_1 772-792 aa
PF13516
LRR_6 797-810 aa
PF00560
LRR_1 797-818 aa
XP_057789343.1PF08263
LRRNT_2 30-70 aa
PF00560
LRR_1 149-171 aa
PF13855
LRR_8 149-208 aa
PF00560
LRR_1 173-195 aa
PF00560
LRR_1 197-219 aa
PF00560
LRR_1 221-243 aa
PF00560
LRR_1 246-266 aa
PF00560
LRR_1 269-291 aa
PF00560
LRR_1 365-387 aa
PF00560
LRR_1 438-460 aa
PF00560
LRR_1 463-483 aa
PF13855
LRR_8 463-522 aa
PF00560
LRR_1 487-509 aa
PF00560
LRR_1 562-579 aa
PF00560
LRR_1 627-647 aa
PF13855
LRR_8 627-684 aa
PF13516
LRR_6 648-660 aa
PF00560
LRR_1 649-669 aa
PF13516
LRR_6 674-687 aa
PF00560
LRR_1 674-695 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789340.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 31 | 71 | 7.7e-11 | 42.8 | Leucine rich repeat N-terminal domain |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 122 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 150 | 279 | 8e-73 | 245.9 | Leucine-rich repeat region |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 152 | 174 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 176 | 198 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 200 | 222 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 224 | 246 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 265 | 377 | 8e-73 | 245.9 | Leucine-rich repeat region |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 297 | 318 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 440 | 462 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 451 | 571 | 8e-73 | 245.9 | Leucine-rich repeat region |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 488 | 510 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 536 | 558 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 609 | 631 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 634 | 654 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 634 | 693 | 4.2e-52 | 174.5 | Leucine rich repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 658 | 680 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 733 | 750 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 798 | 818 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 798 | 855 | 4.2e-52 | 174.5 | Leucine rich repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 820 | 840 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789340.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 845 | 858 | 7.8e-11 | 41.9 | Leucine Rich repeat |
XP_057789340.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 845 | 866 | 1.9e-81 | 250.9 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 31 | 71 | 7.7e-11 | 42.8 | Leucine rich repeat N-terminal domain |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 122 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 150 | 279 | 4.6e-67 | 227.0 | Leucine-rich repeat region |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 152 | 174 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 176 | 198 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 200 | 222 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 224 | 246 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 266 | 377 | 4.6e-67 | 227.0 | Leucine-rich repeat region |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 297 | 318 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 433 | 519 | 4.6e-67 | 227.0 | Leucine-rich repeat region |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 440 | 462 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 488 | 510 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 513 | 534 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 537 | 558 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 560 | 582 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 586 | 605 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 586 | 644 | 2.6e-49 | 165.5 | Leucine rich repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 609 | 631 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 684 | 701 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 749 | 769 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 771 | 792 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789341.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 796 | 809 | 2.1e-08 | 34.3 | Leucine Rich repeat |
XP_057789341.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 796 | 817 | 7e-78 | 240.3 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 31 | 71 | 7.3e-11 | 42.9 | Leucine rich repeat N-terminal domain |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 122 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 150 | 255 | 1.5e-65 | 222.0 | Leucine-rich repeat region |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 152 | 174 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 176 | 198 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 200 | 221 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 236 | 329 | 1.5e-65 | 222.0 | Leucine-rich repeat region |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 249 | 270 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 387 | 522 | 1.5e-65 | 222.0 | Leucine-rich repeat region |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 392 | 414 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 440 | 462 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 488 | 510 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 561 | 583 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 586 | 606 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 586 | 645 | 1.1e-47 | 160.4 | Leucine rich repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 610 | 632 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 685 | 702 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 750 | 770 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 750 | 807 | 1.1e-47 | 160.4 | Leucine rich repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 772 | 792 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789342.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 797 | 810 | 5.8e-13 | 48.5 | Leucine Rich repeat |
XP_057789342.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 797 | 818 | 4.6e-76 | 234.9 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 70 | 1.8e-10 | 41.6 | Leucine rich repeat N-terminal domain |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 149 | 171 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 149 | 208 | 4e-39 | 132.9 | Leucine rich repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 173 | 195 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 197 | 219 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 221 | 243 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 246 | 266 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 269 | 291 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 365 | 387 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 438 | 460 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 463 | 483 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 463 | 522 | 4e-39 | 132.9 | Leucine rich repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 487 | 509 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 562 | 579 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 627 | 647 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 627 | 684 | 4e-39 | 132.9 | Leucine rich repeat |
XP_057789343.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 648 | 660 | 2.8e-05 | 24.5 | Leucine Rich repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 649 | 669 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
XP_057789343.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 674 | 687 | 2.8e-05 | 24.5 | Leucine Rich repeat |
XP_057789343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 674 | 695 | 1.9e-63 | 197.3 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。