Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005887`

染色体: Chr01 坐标: 74788724-74795607 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005887`
名称	SmilChr01G005887
描述	receptor-like protein 52
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74788724 - 74795607 / `+`

ID 对照

NCBI Gene ID	`LOC131006181`
GeneID	`131006181`
locus_tag	`-`
NCBI Name	`LOC131006181`
原始查询	`SmilChr01G005887`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 52
产物	receptor-like protein 52
Arabidopsis	`AT3G11010` (RLP34) receptor like protein 34 [Source:NCBI gene (formerly Entrezgene);Acc:820272] identity=34.3; qcov=1.02; evalue=9.31e-136; confidence=low
Rice	`Os01g0160200` - identity=32.4; qcov=1.12; evalue=7.77e-122; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131006181

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789345.1`
2	Nucleus	细胞核	0.00000	`XP_057789345.1`
3	Chromosome	染色体	0.00000	`XP_057789345.1`
4	Centromere	着丝粒	0.00000	`XP_057789345.1`
5	Chromatin	染色质	0.00000	`XP_057789345.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74788864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,C26
`Chr1:74788949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr1:74788953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,C26
`Chr1:74788957`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:74789025`	`ACT`	`A`	2bp_deletion	frameshift_variant	11	B105,B128,B54,B95,C10,C22,C40,C50,C71,D2,D3
`Chr1:74789031`	`GC`	`G`	1bp_deletion	frameshift_variant	11	B105,B128,B54,B95,C10,C22,C40,C50,C71,D2,D3
`Chr1:74789048`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	A15,B64,B69,B76,B91,B94,C36
`Chr1:74789052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B18,B43,C79
`Chr1:74789068`	`CA`	`C`	1bp_deletion	frameshift_variant	14	A1,B105,B128,B54,B7,B95,C10,C22,C40,C46,C50,C71,D2,D6
`Chr1:74789082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr1:74789105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B108,B72,B99,C52
`Chr1:74789118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789345.1

877 aa

438

877

LRRNT_2

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 31-71 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 152-174 aa PF00560 LRR_1 176-198 aa PF00560 LRR_1 200-222 aa PF00560 LRR_1 224-246 aa PF23598 LRR_14 238-326 aa PF00560 LRR_1 249-270 aa PF00560 LRR_1 417-436 aa PF13855 LRR_8 467-523 aa PF00560 LRR_1 512-534 aa PF00560 LRR_1 561-583 aa PF13855 LRR_8 561-620 aa PF00560 LRR_1 702-722 aa PF00560 LRR_1 724-746 aa PF00560 LRR_1 749-770 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789345.1`	Pfam	`PF08263`	LRRNT_2	Family	31	71	1.5e-10	41.8	Leucine rich repeat N-terminal domain
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	100	122	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	152	174	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	176	198	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	200	222	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	224	246	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF23598`	LRR_14	Repeat	238	326	8.4e-50	170.2	Leucine-rich repeat region
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	249	270	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	417	436	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF13855`	LRR_8	Repeat	467	523	1.2e-49	166.6	Leucine rich repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	512	534	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	561	583	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF13855`	LRR_8	Repeat	561	620	1.2e-49	166.6	Leucine rich repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	702	722	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	724	746	3e-63	196.7	Leucine Rich Repeat
`XP_057789345.1`	Pfam	`PF00560`	LRR_1	Repeat	749	770	3e-63	196.7	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933362.1
CAATAGACTTTCCCCACAACCTCCCAACCCCCAACCGACACACATGCAGACATAAAAATATATAGCTATATAGTGGTAGCTCAAATCTTGAATTGCTCATCACACATTACTATTTTTGAAATCAAACCTAATGGATAGATCTTCCCACTTCTACCTCCTTATAACATCACTCTTACTACTTCATTGTTTTATAGATTATAGCTCAGCCATCTCAGATATCAACACCGATCGTTCCTCACTTCTCGCCTTAAAATCCCAAA...

CDS

1 records

下载 CDS FASTA

LOC131006181
ATGGATAGATCTTCCCACTTCTACCTCCTTATAACATCACTCTTACTACTTCATTGTTTTATAGATTATAGCTCAGCCATCTCAGATATCAACACCGATCGTTCCTCACTTCTCGCCTTAAAATCCCAAATCACATTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTGAAGCCAGTGTTTGCAGTTGGATCGGAGTTACTTGTGATTCACGTTACAATAGGGTTACGCAGTTGAATATATCGTACATGGGTCT...

Protein

1 records

下载 Protein FASTA

XP_057789345.1
MDRSSHFYLLITSLLLLHCFIDYSSAISDINTDRSSLLALKSQITLDPQNILTQNWSTEASVCSWIGVTCDSRYNRVTQLNISYMGLVGTLPPEIGNLSSLVSLDVNYNSFHGPIPPSLFNLSSIEILNLRNNSLSGRLPDLDMCKHNNLGRLKILRFSYNELYGEIPSSLGQCSQLEFLSLFNNNFTGFVPKEIGNLTNLQVLNLGANNLSGNIPKEIGRLPNLQVLDMSFNSFNGHLPREIGNLTMLQLLDLGNNKLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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