当前解析结果
SmilChr01G005895| 统一新 Gene ID | SmilChr01G005895 |
|---|---|
| 名称 | SmilChr01G005895 |
| 描述 | probable E3 ubiquitin-protein ligase ARI5 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74873891 - 74875517 / + |
| NCBI Gene ID | LOC131006190 |
|---|---|
| GeneID | 131006190 |
| locus_tag | - |
| NCBI Name | LOC131006190 |
| 原始查询 | SmilChr01G005895 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase ARI5 |
| 产物 | probable E3 ubiquitin-protein ligase ARI5 |
| Arabidopsis | AT2G31510 (ARI7)IBR domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817709] identity=43.8; qcov=1.06; evalue=1.81e-147; confidence=medium |
| Rice | Os08g0540300 (P0666G10.134)- identity=44.8; qcov=0.988; evalue=8.85e-143; confidence=medium |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF01485 (IBR); PF22191 (IBR_1); PF26200 (Rcat_RNF216) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006190 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789353.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057789353.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057789353.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057789353.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057789353.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74874019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B42,C23,C57 |
Chr1:74874027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B42,C23,C57 |
Chr1:74874040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr1:74874154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:74874241 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:74874246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B12,B126,B79,C63 |
Chr1:74874303 |
C |
CA |
1bp_insertion | frameshift_variant | 5 | B101,B126,C18,C75,D5 |
Chr1:74874303 |
C |
CA |
1bp_insertion | CDS_variant | 5 | B101,B126,C18,C75,D5 |
Chr1:74874318 |
GAA |
G |
2bp_deletion | frameshift_variant | 12 | A4,B48,B51,B66,C2,C21,C23,C48,C51,C73,C74,D10 |
Chr1:74874321 |
T |
TTG |
2bp_insertion | frameshift_variant | 12 | A4,B48,B51,B66,C2,C21,C23,C48,C51,C73,C74,D10 |
Chr1:74874374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr1:74874382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789353.1PF01485
IBR 199-264 aa
PF22191
IBR_1 286-326 aa
PF01485
IBR 286-327 aa
PF26200
Rcat_RNF216 286-338 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789353.1 |
Pfam | PF01485 |
IBR | Domain | 199 | 264 | 4.6e-18 | 65.8 | IBR domain, a half RING-finger domain |
XP_057789353.1 |
Pfam | PF22191 |
IBR_1 | Domain | 286 | 326 | 8.5e-12 | 45.5 | IBR domain |
XP_057789353.1 |
Pfam | PF01485 |
IBR | Domain | 286 | 327 | 4.6e-18 | 65.8 | IBR domain, a half RING-finger domain |
XP_057789353.1 |
Pfam | PF26200 |
Rcat_RNF216 | Domain | 286 | 338 | 1.1e-08 | 36.2 | RNF216 Rcat domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。