当前解析结果
SmilChr01G005896| 统一新 Gene ID | SmilChr01G005896 |
|---|---|
| 名称 | SmilChr01G005896 |
| 描述 | probable E3 ubiquitin-protein ligase ARI11 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74879954 - 74880883 / + |
| NCBI Gene ID | LOC131013239 |
|---|---|
| GeneID | 131013239 |
| locus_tag | - |
| NCBI Name | LOC131013239 |
| 原始查询 | SmilChr01G005896 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase ARI11 |
| 产物 | probable E3 ubiquitin-protein ligase ARI11 |
| Arabidopsis | AT2G31510 (ARI7)IBR domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817709] identity=32.3; qcov=1.08; evalue=3.52e-41; confidence=low |
| Rice | Os09g0559000- identity=37; qcov=0.806; evalue=3.7e-36; confidence=medium |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF01485 (IBR); PF22191 (IBR_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013239 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057797298.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057797298.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797298.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797298.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797298.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74879980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,C65 |
Chr1:74879998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:74880004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B2,B34 |
Chr1:74880053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B2,C70 |
Chr1:74880062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,D7 |
Chr1:74880068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,B65,C85 |
Chr1:74880069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,D7 |
Chr1:74880086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,B65 |
Chr1:74880245 |
GT |
G |
1bp_deletion | frameshift_variant | 5 | B112,B89,C39,C56,C79 |
Chr1:74880245 |
GT |
G |
1bp_deletion | CDS_variant | 5 | B112,B89,C39,C56,C79 |
Chr1:74880266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr1:74880290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797298.1PF01485
IBR 181-246 aa
PF22191
IBR_1 274-308 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797298.1 |
Pfam | PF01485 |
IBR | Domain | 181 | 246 | 1e-13 | 51.8 | IBR domain, a half RING-finger domain |
XP_057797298.1 |
Pfam | PF22191 |
IBR_1 | Domain | 274 | 308 | 6.4e-08 | 33.1 | IBR domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。