当前解析结果
SmilChr01G005898| 统一新 Gene ID | SmilChr01G005898 |
|---|---|
| 名称 | SmilChr01G005898 |
| 描述 | pleiotropic drug resistance protein 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74887184 - 74896636 / + |
| NCBI Gene ID | LOC131006186 |
|---|---|
| GeneID | 131006186 |
| locus_tag | - |
| NCBI Name | LOC131006186 |
| 原始查询 | SmilChr01G005898 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pleiotropic drug resistance protein 2-like |
| 产物 | pleiotropic drug resistance protein 2-like |
| Arabidopsis | AT2G36380 (ABCG34)pleiotropic drug resistance 6 [Source:NCBI gene (formerly Entrezgene);Acc:818211] identity=69; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0522500 (ABCG43)- identity=59.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF14510 (ABC_trans_N); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006186 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789350.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789350.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789350.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789350.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789350.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74887421 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:74887463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:74887493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,C28,C78 |
Chr1:74887548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr1:74887747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B112,B129,B27,B7 |
Chr1:74887834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr1:74887846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B63,B65 |
Chr1:74887861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B2 |
Chr1:74888600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B41,C27,C67,D2 |
Chr1:74888606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,D4 |
Chr1:74888628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B35,B56,B96,C1,C44 |
Chr1:74888649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B41,C27,C67,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789350.1PF14510
ABC_trans_N 113-162 aa
PF00005
ABC_tran 188-370 aa
PF19055
ABC2_membrane_7 403-476 aa
PF01061
ABC2_membrane 524-736 aa
PF08370
PDR_assoc 741-804 aa
PF00005
ABC_tran 875-1027 aa
PF01061
ABC2_membrane 1173-1385 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789350.1 |
Pfam | PF14510 |
ABC_trans_N | Domain | 113 | 162 | 5.5e-07 | 30.6 | ABC-transporter N-terminal |
XP_057789350.1 |
Pfam | PF00005 |
ABC_tran | Domain | 188 | 370 | 5.2e-41 | 141.2 | ABC transporter |
XP_057789350.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 403 | 476 | 5.5e-14 | 52.6 | ABC-2 type transporter |
XP_057789350.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 524 | 736 | 1.8e-100 | 335.5 | ABC-2 type transporter |
XP_057789350.1 |
Pfam | PF08370 |
PDR_assoc | Family | 741 | 804 | 5.1e-22 | 78.1 | Plant PDR ABC transporter associated |
XP_057789350.1 |
Pfam | PF00005 |
ABC_tran | Domain | 875 | 1027 | 5.2e-41 | 141.2 | ABC transporter |
XP_057789350.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1173 | 1385 | 1.8e-100 | 335.5 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。