当前解析结果
SmilChr01G005902| 统一新 Gene ID | SmilChr01G005902 |
|---|---|
| 名称 | SmilChr01G005902 |
| 描述 | probable E3 ubiquitin-protein ligase ARI10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74909548 - 74912987 / - |
| NCBI Gene ID | LOC131013252 |
|---|---|
| GeneID | 131013252 |
| locus_tag | - |
| NCBI Name | LOC131013252 |
| 原始查询 | SmilChr01G005902 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase ARI10 |
| 产物 | probable E3 ubiquitin-protein ligase ARI10 |
| Arabidopsis | AT2G31510 (ARI7)IBR domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817709] identity=42.7; qcov=0.743; evalue=9.15e-125; confidence=medium |
| Rice | Os08g0540300 (P0666G10.134)- identity=39.9; qcov=0.723; evalue=5.12e-115; confidence=medium |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF01485 (IBR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013252 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797306.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057797306.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057797306.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057797306.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057797306.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74909560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B19,B68,C44 |
Chr1:74909563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B19,B68 |
Chr1:74909578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr1:74909749 |
AGG |
A |
2bp_deletion | frameshift_variant | 14 | A18,A5,A7,B120,B33,B44,B62,B8,C34,C5,C76,D3,D4,D9 |
Chr1:74909777 |
T |
TG |
1bp_insertion | frameshift_variant | 40 | A19,A22,A23,A24,A5,A6,B10,B107,B108,B115,B117,B121,B128,B130,B132,B138,B19,B2,B20,B23,B3,B34,B4,B41,B57,B72,C12,C2,C26,C41,C51,C52,C6,C67,C80,C81,C83,C85,D2,D6 |
Chr1:74909778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,B78 |
Chr1:74909791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,D4 |
Chr1:74910662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,C78 |
Chr1:74910665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr1:74910784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C30,C4 |
Chr1:74910815 |
ACG |
* |
2bp_deletion | CDS_variant | 3 | B62,C8,D9 |
Chr1:74910818 |
AC |
* |
1bp_deletion | CDS_variant | 2 | C50,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797306.1PF01485
IBR 176-243 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797306.1 |
Pfam | PF01485 |
IBR | Domain | 176 | 243 | 1.7e-13 | 51.1 | IBR domain, a half RING-finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。