当前解析结果
SmilChr01G005904| 统一新 Gene ID | SmilChr01G005904 |
|---|---|
| 名称 | SmilChr01G005904 |
| 描述 | uncharacterized SmilChr01G005904 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74919083 - 74921278 / - |
| NCBI Gene ID | LOC131013276 |
|---|---|
| GeneID | 131013276 |
| locus_tag | - |
| NCBI Name | LOC131013276 |
| 原始查询 | SmilChr01G005904 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971]; symbol=AT3G23880; hit=AT3G23880; species=arabidopsis; confidence=weak |
| 产物 | F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971]; symbol=AT3G23880; hit=AT3G23880; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=38.2; qcov=0.211; evalue=2.32e-11; confidence=weak |
| Rice | Os10g0566300 (OsFbox561)- identity=32.6; qcov=0.237; evalue=1.97e-08; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013276 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797322.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057797322.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057797322.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797322.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797322.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74919109 |
T |
TA |
1bp_insertion | frameshift_variant | 12 | B1,B13,B134,B23,B70,B90,B92,C62,C79,C82,C83,C87 |
Chr1:74919116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr1:74919130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,C8,C82 |
Chr1:74919250 |
T |
TGC |
2bp_insertion | frameshift_variant | 4 | B27,B68,C50,C7 |
Chr1:74919250 |
T |
TGC |
2bp_insertion | CDS_variant | 4 | B27,B68,C50,C7 |
Chr1:74919257 |
CTG |
* |
2bp_deletion | CDS_variant | 2 | B68,C7 |
Chr1:74919307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr1:74919381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr1:74919400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C82 |
Chr1:74919697 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A5,B16,C69 |
Chr1:74919697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B16,C69 |
Chr1:74919707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797322.1PF08268
FBA_3 22-268 aa
PF07734
FBA_1 51-265 aa
PF12937
F-box-like 385-416 aa
PF00646
F-box 385-420 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797322.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 22 | 268 | 7.5e-13 | 48.9 | F-box associated beta propeller domain |
XP_057797322.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 51 | 265 | 1e-21 | 78.0 | F-box associated beta propeller domain |
XP_057797322.1 |
Pfam | PF12937 |
F-box-like | Domain | 385 | 416 | 6e-06 | 26.7 | F-box-like |
XP_057797322.1 |
Pfam | PF00646 |
F-box | Domain | 385 | 420 | 8.8e-11 | 42.0 | F-box domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。