Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005908`

染色体: Chr01 坐标: 74946885-74948365 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005908`
名称	SmilChr01G005908
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74946885 - 74948365 / `-`

ID 对照

NCBI Gene ID	`LOC131006207`
GeneID	`131006207`
locus_tag	`-`
NCBI Name	`LOC131006207`
原始查询	`SmilChr01G005908`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=29.6; qcov=1.07; evalue=3.04e-27; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=26.2; qcov=0.858; evalue=2.93e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131006207

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789370.1`
2	Cytoplasm	细胞质	0.60000	`XP_057789370.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789370.1`
4	Chromosome	染色体	0.00000	`XP_057789370.1`
5	Centromere	着丝粒	0.00000	`XP_057789370.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74947070`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B122
`Chr1:74947070`	`T`	`TA`	1bp_insertion	CDS_variant	1	B122
`Chr1:74947200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:74947322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B78,B8,C12
`Chr1:74947335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B45,C33,C74,C77
`Chr1:74947514`	`T`	`TAG`	2bp_insertion	frameshift_variant	2	B38,B65
`Chr1:74947514`	`T`	`TAG`	2bp_insertion	CDS_variant	2	B38,B65
`Chr1:74947515`	`CTT`	`C`	2bp_deletion	frameshift_variant	2	B38,B65
`Chr1:74947515`	`CTT`	`C`	2bp_deletion	CDS_variant	2	B38,B65
`Chr1:74947524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B108,B29,B95,C35
`Chr1:74947526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr1:74947561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789370.1

352 aa

176

352

F-box

FBA_3

FBA_1

PF00646 F-box 9-48 aa PF08268 FBA_3 88-288 aa PF07734 FBA_1 98-319 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789370.1`	Pfam	`PF00646`	F-box	Domain	9	48	1.5e-10	41.3	F-box domain
`XP_057789370.1`	Pfam	`PF08268`	FBA_3	Repeat	88	288	4.5e-09	36.5	F-box associated beta propeller domain
`XP_057789370.1`	Pfam	`PF07734`	FBA_1	Repeat	98	319	4.7e-19	69.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933387.1
TATTTATTTATATATAACTTATGGTAGGAGAATCATATATTGCAATTGATTGAATTGGCATTCGCAATTCCCTCTCTATTCTCCTCTCTCTAGAGTTCCGAATTAGGTTGGCTTTTGAAGCGTTAGTATGCTTTAATTCTATAGTATAAGAAAGGAGAAAGTATTTTCGTGTTCGCCGCCAGCTATGGAGACCCGAGACATTTACCCATCTCTTTCCAAAGAAATCATCGAAGAAATACTGTTAAGACTACCGGTGAAAT...

CDS

1 records

下载 CDS FASTA

LOC131006207
ATGGAGACCCGAGACATTTACCCATCTCTTTCCAAAGAAATCATCGAAGAAATACTGTTAAGACTACCGGTGAAATCACTCCTGAGATTCAGGTGCGTCTCGAAAGAATGGCAATCTCTGATCGACAGCAAACGATTCATAAGAACCCACCTTCAAAATTCGGCAAGAAACCCTAGTTTAGCCCACCACAAGGTTTTGCTGCTCAAATATGTGTCTTCACTGCCAACGCTGTTGCAACGCTCTGTACTCGATAGCTCAGA...

Protein

1 records

下载 Protein FASTA

XP_057789370.1
METRDIYPSLSKEIIEEILLRLPVKSLLRFRCVSKEWQSLIDSKRFIRTHLQNSARNPSLAHHKVLLLKYVSSLPTLLQRSVLDSSDTHDALELEFPVDYIHIVGCCNGLVCLLLDRDRQRQFVLWNPSLRISKKLSQTDMMPFFHFYCCGFGWDESSGDYKVFAIAKRASGKSIYWIYSLKSDSWKESEEVKDWDSCKKEDRSRYGESEMGVFASGSLHWETTDRRGVVACDLKREALGAAMELPKCSECCRWQGIEVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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