当前解析结果
SmilChr01G005911| 统一新 Gene ID | SmilChr01G005911 |
|---|---|
| 名称 | SmilChr01G005911 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74963277 - 74964472 / - |
| NCBI Gene ID | LOC131013303 |
|---|---|
| GeneID | 131013303 |
| locus_tag | - |
| NCBI Name | LOC131013303 |
| 原始查询 | SmilChr01G005911 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=25.4; qcov=0.982; evalue=1.3e-12; confidence=low |
| Rice | Os03g0366350 (OsFbox141)- identity=29.7; qcov=0.486; evalue=2.84e-09; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013303 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057797366.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057797366.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057797366.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797366.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797366.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74963324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,B90,B92,C82 |
Chr1:74963328 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr1:74963424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:74963428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B139,B18,C85 |
Chr1:74963444 |
TGC |
T |
2bp_deletion | frameshift_variant | 65 | A1,A10,A11,A23,B100,B109,B118,B119,B12,B120,B126,B134,B135,B139,B14,B17,B19,B2,B26,B30,B38,B39,B47,B51,B52,B54,B56,B57,B63,B65,B66,B78,B8,B83,B85,B88,B93,B96,C10,C16,C25,C28,C31,C34,C38,C39,C50,C52,C53,C55,C58,C62,C68,C7,C75,C78,C79,C83,C84,C87,D5,D6,D7,D8,D9 |
Chr1:74963448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C33,C63,D4 |
Chr1:74963449 |
A |
ATT |
2bp_insertion | frameshift_variant | 67 | A1,A10,A11,A23,A4,B100,B109,B118,B119,B12,B120,B126,B135,B139,B14,B17,B19,B2,B26,B30,B36,B38,B39,B44,B47,B51,B52,B54,B56,B57,B62,B63,B65,B66,B78,B8,B83,B85,B88,B93,B96,C10,C16,C25,C31,C34,C38,C39,C50,C52,C53,C55,C58,C62,C68,C7,C75,C78,C79,C83,C84,C87,D5,D6,D7,D8,D9 |
Chr1:74963481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,C84 |
Chr1:74963505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C4,C55 |
Chr1:74963506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C4,C55 |
Chr1:74963525 |
A |
AT |
1bp_insertion | frameshift_variant | 11 | A2,B11,B68,B83,B85,C32,C42,C50,C64,C66,C74 |
Chr1:74963526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B36,B48,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797366.1PF12937
F-box-like 36-67 aa
PF00646
F-box 36-71 aa
PF07734
FBA_1 175-327 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797366.1 |
Pfam | PF12937 |
F-box-like | Domain | 36 | 67 | 4.8e-06 | 27.0 | F-box-like |
XP_057797366.1 |
Pfam | PF00646 |
F-box | Domain | 36 | 71 | 2.1e-10 | 40.8 | F-box domain |
XP_057797366.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 175 | 327 | 7.4e-09 | 35.8 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。