当前解析结果
SmilChr01G005932| 统一新 Gene ID | SmilChr01G005932 |
|---|---|
| 名称 | SmilChr01G005932 |
| 描述 | uncharacterized SmilChr01G005932 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75089197 - 75093357 / + |
| NCBI Gene ID | LOC131013428 |
|---|---|
| GeneID | 131013428 |
| locus_tag | - |
| NCBI Name | LOC131013428 |
| 原始查询 | SmilChr01G005932 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Arginyl-tRNA synthetase, class Ic [Source:NCBI gene (formerly Entrezgene);Acc:828736]; symbol=emb1027; hit=AT4G26300; species=arabidopsis; confidence=low |
| 产物 | Arginyl-tRNA synthetase, class Ic [Source:NCBI gene (formerly Entrezgene);Acc:828736]; symbol=emb1027; hit=AT4G26300; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G26300 (emb1027)Arginyl-tRNA synthetase, class Ic [Source:NCBI gene (formerly Entrezgene);Acc:828736] identity=74.2; qcov=0.436; evalue=3.47e-83; confidence=low |
| Rice | Os01g0158500- identity=66.3; qcov=0.457; evalue=7.31e-75; confidence=medium |
| GO | GO:0004814 (arginine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0006420 (arginyl-tRNA aminoacylation) |
| KEGG | smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00750 (tRNA-synt_1d); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013428 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057797481.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057797481.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057797481.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057797481.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057797481.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75089208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B80,C38,C44,C6 |
Chr1:75089288 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B129,B30 |
Chr1:75089288 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B129,B30 |
Chr1:75089310 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | A18 |
Chr1:75089310 |
CA |
C |
1bp_deletion | CDS_variant | 1 | A18 |
Chr1:75089315 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | A18 |
Chr1:75089315 |
A |
AG |
1bp_insertion | CDS_variant | 1 | A18 |
Chr1:75089335 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | A23,B22,B89 |
Chr1:75089335 |
TC |
T |
1bp_deletion | CDS_variant | 3 | A23,B22,B89 |
Chr1:75089338 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | A23,B22,B89 |
Chr1:75089338 |
C |
CT |
1bp_insertion | CDS_variant | 3 | A23,B22,B89 |
Chr1:75089387 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B15,B40,B90,B92,C24,C37,C49,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797481.1PF08263
LRRNT_2 30-70 aa
PF00750
tRNA-synt_1d 169-317 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797481.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 70 | 1.1e-06 | 29.5 | Leucine rich repeat N-terminal domain |
XP_057797481.1 |
Pfam | PF00750 |
tRNA-synt_1d | Domain | 169 | 317 | 4.8e-41 | 141.6 | tRNA synthetases class I (R), catalytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。