Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005937`

染色体: Chr01 坐标: 75116386-75117981 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005937`
名称	SmilChr01G005937
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75116386 - 75117981 / `-`

ID 对照

NCBI Gene ID	`LOC131006213`
GeneID	`131006213`
locus_tag	`-`
NCBI Name	`LOC131006213`
原始查询	`SmilChr01G005937`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=29.1; qcov=1.08; evalue=7.45e-27; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=26.9; qcov=0.858; evalue=4e-13; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131006213

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789376.1`
2	Cytoplasm	细胞质	0.80000	`XP_057789377.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789376.1`
4	Chromosome	染色体	0.00000	`XP_057789376.1`
5	Centromere	着丝粒	0.00000	`XP_057789376.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75116666`	`T`	`TAG`	2bp_insertion	frameshift_variant	5	A16,B113,B63,B69,C65
`Chr1:75116666`	`T`	`TAG`	2bp_insertion	CDS_variant	5	A16,B113,B63,B69,C65
`Chr1:75116721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:75116742`	`T`	`TA`	1bp_insertion	frameshift_variant	8	B125,B90,C23,C39,C56,C6,C62,C65
`Chr1:75116820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr1:75116837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr1:75116966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr1:75117205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B75,C85,D4
`Chr1:75117212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B90
`Chr1:75117222`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B60,B66
`Chr1:75117272`	`GTC`	`G`	2bp_deletion	frameshift_variant	29	A22,A23,A7,B102,B118,B126,B13,B136,B139,B140,B23,B36,B40,B6,B64,B66,B70,B90,C27,C34,C35,C39,C51,C59,C60,C61,C62,C73,C84
`Chr1:75117278`	`GAC`	`G`	2bp_deletion	frameshift_variant	6	B126,B6,C27,C35,C51,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789376.1

366 aa

183

366

F-box

FBA_3

FBA_1

PF00646 F-box 24-62 aa PF08268 FBA_3 104-303 aa PF07734 FBA_1 116-339 aa

XP_057789377.1

351 aa

176

351

F-box

FBA_3

FBA_1

PF00646 F-box 9-47 aa PF08268 FBA_3 89-288 aa PF07734 FBA_1 101-324 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789376.1`	Pfam	`PF00646`	F-box	Domain	24	62	3.4e-10	40.1	F-box domain
`XP_057789376.1`	Pfam	`PF08268`	FBA_3	Repeat	104	303	8.8e-10	38.8	F-box associated beta propeller domain
`XP_057789376.1`	Pfam	`PF07734`	FBA_1	Repeat	116	339	3.2e-16	59.9	F-box associated beta propeller domain
`XP_057789377.1`	Pfam	`PF00646`	F-box	Domain	9	47	3.3e-10	40.2	F-box domain
`XP_057789377.1`	Pfam	`PF08268`	FBA_3	Repeat	89	288	7.9e-10	39.0	F-box associated beta propeller domain
`XP_057789377.1`	Pfam	`PF07734`	FBA_1	Repeat	101	324	2.8e-16	60.1	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933393.1
TAAATAACTTATGGTAGGAGAATCGTATACTGCAATTGATTGAATTCGCATTCGCAATTCCCTCTCTATTCTCCCCTCTCTAGAGTTCCGAATTAGGTTGGCTTTTGAAGCGTTAGTATGCTTTAATTCTATAGTATAAGAAAGGTATGCGAATTGATGATGAGAAAGTATTTTCGTGTTCGCCGCCAGCTATGGAGACCCGAGACATTTACCCATCTCTTTCCAAAGAAATCATCGAAGAAATACTGTTAAGACTACCG...

XM_057933394.1
AATAACTTATGGTAGGAGAATCGTATACTGCAATTGATTGAATTCGCATTCGCAATTCCCTCTCTATTCTCCCCTCTCTAGAGTTCCGAATTAGGTTGGCTTTTGAAGCGTTAGTATGCTTTAATTCTATAGTATAAGAAAGGAGAAAGTATTTTCGTGTTCGCCGCCAGCTATGGAGACCCGAGACATTTACCCATCTCTTTCCAAAGAAATCATCGAAGAAATACTGTTAAGACTACCGGTGAAATCACTCCTGAGAT...

CDS

2 records

下载 CDS FASTA

LOC131006213
ATGCGAATTGATGATGAGAAAGTATTTTCGTGTTCGCCGCCAGCTATGGAGACCCGAGACATTTACCCATCTCTTTCCAAAGAAATCATCGAAGAAATACTGTTAAGACTACCGGTGAAATCACTCCTGAGATTCAGGTGCGTCTCGAAAGCATGGCAATCTCTGATCGACAGAAAACGATTCATCAGAACCCACCTTCAAAATTCGGCAAGAAACCCTAGTTTAGCCCGCCACAAGGTTTTGCTGCTCAAATATGTGTC...

LOC131006213
ATGGAGACCCGAGACATTTACCCATCTCTTTCCAAAGAAATCATCGAAGAAATACTGTTAAGACTACCGGTGAAATCACTCCTGAGATTCAGGTGCGTCTCGAAAGCATGGCAATCTCTGATCGACAGAAAACGATTCATCAGAACCCACCTTCAAAATTCGGCAAGAAACCCTAGTTTAGCCCGCCACAAGGTTTTGCTGCTCAAATATGTGTCTTCACTGCCAACGCTGTTGCAACGCTCTGTACTCGATAGCTCAGA...

Protein

2 records

下载 Protein FASTA

XP_057789376.1
MRIDDEKVFSCSPPAMETRDIYPSLSKEIIEEILLRLPVKSLLRFRCVSKAWQSLIDRKRFIRTHLQNSARNPSLARHKVLLLKYVSSLPTLLQRSVLDSSDTDDALELEFPFDFIKIVGCCNGLVCLLLDRERQREFVLWNPSLRISKKLSETDMMSFFQFYCCGFGWDESSGDYKVFAIAKRASGKSIYWIYSLKSDSWKESEEVKGWDSCKKEDRSRYDKCEMGVFASGSLHWETTDRRGVVACDLKREALGAVELP...

XP_057789377.1
METRDIYPSLSKEIIEEILLRLPVKSLLRFRCVSKAWQSLIDRKRFIRTHLQNSARNPSLARHKVLLLKYVSSLPTLLQRSVLDSSDTDDALELEFPFDFIKIVGCCNGLVCLLLDRERQREFVLWNPSLRISKKLSETDMMSFFQFYCCGFGWDESSGDYKVFAIAKRASGKSIYWIYSLKSDSWKESEEVKGWDSCKKEDRSRYDKCEMGVFASGSLHWETTDRRGVVACDLKREALGAVELPECSECCRWQGIEVIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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