当前解析结果
SmilChr01G005954| 统一新 Gene ID | SmilChr01G005954 |
|---|---|
| 名称 | SmilChr01G005954 |
| 描述 | uncharacterized SmilChr01G005954 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75238405 - 75240355 / - |
| NCBI Gene ID | LOC131013506 |
|---|---|
| GeneID | 131013506 |
| locus_tag | - |
| NCBI Name | LOC131013506 |
| 原始查询 | SmilChr01G005954 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971]; symbol=AT3G23880; hit=AT3G23880; species=arabidopsis; confidence=weak |
| 产物 | F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971]; symbol=AT3G23880; hit=AT3G23880; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=37.3; qcov=0.284; evalue=6.58e-16; confidence=weak |
| Rice | Os10g0566300 (OsFbox561)- identity=30.6; qcov=0.334; evalue=1.78e-11; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013506 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057797601.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057797601.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057797601.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797601.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797601.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75238416 |
A |
AT |
1bp_insertion | frameshift_variant | 8 | B107,B115,B128,B70,B9,C34,C56,C80 |
Chr1:75238498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B23 |
Chr1:75238607 |
ATG |
A |
2bp_deletion | frameshift_variant | 2 | B134,C55 |
Chr1:75238607 |
ATG |
A |
2bp_deletion | CDS_variant | 2 | B134,C55 |
Chr1:75238611 |
A |
ACG |
2bp_insertion | frameshift_variant | 1 | C55 |
Chr1:75238611 |
A |
ACG |
2bp_insertion | CDS_variant | 1 | C55 |
Chr1:75238769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:75238816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B8,B88,C47 |
Chr1:75238887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B77,C68,C78 |
Chr1:75238979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B73,B78,B8,C29,C74 |
Chr1:75239038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:75239096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B23,B40,C19,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797601.1PF08268
FBA_3 24-209 aa
PF07734
FBA_1 28-186 aa
PF12937
F-box-like 357-388 aa
PF00646
F-box 357-392 aa
PF07734
FBA_1 433-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797601.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 24 | 209 | 1.4e-17 | 64.4 | F-box associated beta propeller domain |
XP_057797601.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 28 | 186 | 2e-24 | 86.9 | F-box associated beta propeller domain |
XP_057797601.1 |
Pfam | PF12937 |
F-box-like | Domain | 357 | 388 | 7.2e-06 | 26.4 | F-box-like |
XP_057797601.1 |
Pfam | PF00646 |
F-box | Domain | 357 | 392 | 1.7e-10 | 41.1 | F-box domain |
XP_057797601.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 433 | 508 | 2e-24 | 86.9 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。