当前解析结果
SmilChr01G005963| 统一新 Gene ID | SmilChr01G005963 |
|---|---|
| 名称 | SmilChr01G005963 |
| 描述 | putative RING-H2 finger protein ATL36 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75357434 - 75360410 / + |
| NCBI Gene ID | LOC131006231 |
|---|---|
| GeneID | 131006231 |
| locus_tag | - |
| NCBI Name | LOC131006231 |
| 原始查询 | SmilChr01G005963 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative RING-H2 finger protein ATL36 |
| 产物 | putative RING-H2 finger protein ATL36 |
| Arabidopsis | AT4G09120 (AT4G09120)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826490] identity=34.6; qcov=0.624; evalue=3.06e-19; confidence=low |
| Rice | Os02g0676500 (OsRFPH2-2)- identity=44.1; qcov=0.756; evalue=1.23e-39; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006231 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endosome | 内体 | 0.60000 | XP_057789389.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057789389.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057789389.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057789389.1 |
| 5 | Vacuole | 液泡 | 0.20000 | XP_057789389.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75358310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr1:75358822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:75358862 |
C |
CTA |
2bp_insertion | frameshift_variant | 12 | B103,B129,B19,B27,B50,B59,B7,C15,C22,C35,C60,D3 |
Chr1:75359830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B76,C26 |
Chr1:75359870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr1:75359979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr1:75360004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B110,B60,B66,C70 |
Chr1:75360070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B51,C16,C64,C66 |
Chr1:75360083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:75360086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:75360124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,C43 |
Chr1:75360126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789389.1PF17123
zf-RING_11 83-112 aa
PF13923
zf-C3HC4_2 83-125 aa
PF12678
zf-rbx1 83-126 aa
PF13639
zf-RING_2 83-126 aa
PF13445
zf-RING_UBOX 84-123 aa
PF00097
zf-C3HC4 84-125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789389.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 83 | 112 | 3.8e-09 | 36.8 | RING-like zinc finger |
XP_057789389.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 83 | 125 | 4.9e-08 | 33.4 | Zinc finger, C3HC4 type (RING finger) |
XP_057789389.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 83 | 126 | 5.6e-08 | 33.6 | RING-H2 zinc finger domain |
XP_057789389.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 83 | 126 | 8.1e-15 | 55.5 | Ring finger domain |
XP_057789389.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 84 | 123 | 7.6e-08 | 32.9 | RING-type zinc-finger |
XP_057789389.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 84 | 125 | 2.9e-07 | 30.9 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。