当前解析结果
SmilChr01G005968| 统一新 Gene ID | SmilChr01G005968 |
|---|---|
| 名称 | SmilChr01G005968 |
| 描述 | uncharacterized SmilChr01G005968 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75378514 - 75379948 / - |
| NCBI Gene ID | LOC131006235 |
|---|---|
| GeneID | 131006235 |
| locus_tag | - |
| NCBI Name | LOC131006235 |
| 原始查询 | SmilChr01G005968 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830338]; symbol=AT5G04610; hit=AT5G04610; species=arabidopsis; confidence=high |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830338]; symbol=AT5G04610; hit=AT5G04610; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G04610 (AT5G04610)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830338] identity=48.1; qcov=1.03; evalue=2.72e-112; confidence=high |
| Rice | Os08g0520400- identity=39.9; qcov=1.05; evalue=5.37e-80; confidence=medium |
| GO | GO:0006596 (polyamine biosynthetic process) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006235 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057789394.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057789394.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057789394.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789394.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789394.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75378664 |
GA |
G |
1bp_deletion | frameshift_variant | 57 | A13,A22,A23,A6,B10,B110,B111,B112,B117,B129,B133,B136,B17,B19,B21,B30,B42,B43,B46,B5,B50,B6,B61,B63,B68,B73,B74,B80,B86,B87,B89,B9,B91,B97,C15,C20,C22,C30,C34,C35,C36,C39,C4,C40,C47,C48,C5,C51,C52,C56,C60,C63,C67,C8,C9,D3,D4 |
Chr1:75378671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B87,B88,C61 |
Chr1:75378717 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B77 |
Chr1:75378819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr1:75378845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr1:75378860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr1:75378861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,D10 |
Chr1:75378864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B18,B40,C25 |
Chr1:75378886 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C9 |
Chr1:75378886 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C9 |
Chr1:75378898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,D6 |
Chr1:75378941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B47,B66,B76,B78 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。