Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005973`

染色体: Chr01 坐标: 75400437-75403549 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005973`
名称	SmilChr01G005973
描述	uncharacterized SmilChr01G005973
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75400437 - 75403549 / `-`

ID 对照

NCBI Gene ID	`LOC131006241`
GeneID	`131006241`
locus_tag	`-`
NCBI Name	`LOC131006241`
原始查询	`SmilChr01G005973`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817408]; symbol=AT2G28600; hit=AT2G28600; species=arabidopsis; confidence=medium
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817408]; symbol=AT2G28600; hit=AT2G28600; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G28600` (AT2G28600) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817408] identity=56.7; qcov=0.562; evalue=4.15e-72; confidence=medium
Rice	`Os12g0147500` - identity=52.5; qcov=0.551; evalue=5.34e-62; confidence=medium
GO	GO:0000932 (P-body); GO:0003729 (mRNA binding); GO:0005524 (ATP binding); GO:0010494 (cytoplasmic stress granule); GO:0033962 (P-body assembly); GO:0034063 (stress granule assembly)
KEGG	-
Pfam	PF00270 (DEAD)
InterPro	-
eggNOG	-
NR	GeneID:131006241

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789398.1`
2	Nucleolus	核仁	0.80000	`XP_057789398.1`
3	Chromosome	染色体	0.00000	`XP_057789398.1`
4	Centromere	着丝粒	0.00000	`XP_057789398.1`
5	Chromatin	染色质	0.00000	`XP_057789398.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75401501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr1:75401523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B130,B2,B23,B25,B6
`Chr1:75402073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B28,B49,C86
`Chr1:75402115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:75402143`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr1:75402380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr1:75402422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B140,C52
`Chr1:75402461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:75402548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B140,C52
`Chr1:75402629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B74,B98,C43,C74
`Chr1:75402727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:75402734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,A21,B122,B82,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789398.1

370 aa

185

370

DEAD

PF00270 DEAD 244-349 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789398.1`	Pfam	`PF00270`	DEAD	Domain	244	349	1.2e-07	32.4	DEAD/DEAH box helicase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009095442.1
GATCAATTCGGCCCAAATATTTGTGACGAGAATAACCCCCGACATCAAACTTAATACCGAACATATCCAAAAAACCCCAGCTCTTAGATACACGCCCAGTGTGTGTAAAAATCACACACAGCAAAAAACCAGTCGAAATCTGCTCAGGTGCGAGAAAATGGGGAAAAGCGATGATTCCATAAGCAGACGGAGGAACAAGAGGATCCACAGAAAGGCAGAAAGTAAAAAGGATGCGTCATCAAAAGTCTCCAGCCGCGTCG...

XM_057933415.1
GATCAATTCGGCCCAAATATTTGTGACGAGAATAACCCCCGACATCAAACTTAATACCGAACATATCCAAAAAACCCCAGCTCTTAGATACACGCCCAGTGTGTGTAAAAATCACACACAGCAAAAAACCAGTCGAAATCTGCTCAGGTGCGAGAAAATGGGGAAAAGCGATGATTCCATAAGCAGACGGAGGAACAAGAGGATCCACAGAAAGGCAGAAAGTAAAAAGGATGCGTCATCAAAAGTCTCCAGCCGCGTCG...

CDS

1 records

下载 CDS FASTA

LOC131006241
ATGGGGAAAAGCGATGATTCCATAAGCAGACGGAGGAACAAGAGGATCCACAGAAAGGCAGAAAGTAAAAAGGATGCGTCATCAAAAGTCTCCAGCCGCGTCGCCGCTTTTATCGCCGCCAAGAAGCGCCGCCAGTCCGGCAAACGCCGCCAGTGCCAGGGTATGTGCTTCAGCCTTCCCTCAGCTGAGGACCCCTTCAATGAAAGAGAGGGTAAACCCGAACCCACGAGAAAAAGGAAGAGAGATTCGAAAGAAGATAG...

Protein

1 records

下载 Protein FASTA

XP_057789398.1
MGKSDDSISRRRNKRIHRKAESKKDASSKVSSRVAAFIAAKKRRQSGKRRQCQGMCFSLPSAEDPFNEREGKPEPTRKRKRDSKEDRKLKDKKSPRVKKEFIKDNVVKSQIVEKGKIALFSCIEFMGPEIATNLGKPAHRIIKRDGSKCSWKELVSDHIDGSPSKFLIMCLNTIQSALHNGAALSGGKDKPLFASAWGLEFWNCYCAGIDVLEASGADSKREQISWIASTAADIISMKEKEGVSFTGPFLLYLVPSQEKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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