Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005974`

染色体: Chr01 坐标: 75403707-75413345 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005974`
名称	SmilChr01G005974
描述	phosphatidylinositol-3-phosphatase myotubularin-1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75403707 - 75413345 / `+`

ID 对照

NCBI Gene ID	`LOC131006240`
GeneID	`131006240`
locus_tag	`-`
NCBI Name	`LOC131006240`
原始查询	`SmilChr01G005974`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylinositol-3-phosphatase myotubularin-1
产物	phosphatidylinositol-3-phosphatase myotubularin-1
Arabidopsis	`AT3G10550` (MTM1) Myotubularin-like phosphatases II superfamily [Source:NCBI gene (formerly Entrezgene);Acc:820220] identity=66.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os08g0556700` - identity=57.4; qcov=0.634; evalue=0; confidence=high
GO	GO:0016311 (dephosphorylation); GO:0016791 (phosphatase activity)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage))
Pfam	PF06602 (Myotub-related)
InterPro	-
eggNOG	-
NR	GeneID:131006240

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789397.1`
2	Cytosol	细胞质基质	0.60000	`XP_057789397.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057789397.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057789397.1`
5	Nucleus	细胞核	0.00000	`XP_057789397.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75403914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B35,B56,B96
`Chr1:75405759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,C52
`Chr1:75405782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B49,C3
`Chr1:75406576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B7,B71,C2,C60
`Chr1:75407619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr1:75408721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,B49,C3
`Chr1:75408894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,D1
`Chr1:75409476`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B43
`Chr1:75409476`	`GT`	`G`	1bp_deletion	CDS_variant	1	B43
`Chr1:75409813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr1:75410356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:75411051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789397.1

849 aa

424

849

Myotub-related

PF06602 Myotub-related 213-588 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789397.1`	Pfam	`PF06602`	Myotub-related	Domain	213	588	1e-123	413.4	Myotubularin-like phosphatase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933414.1
AACTCATAATTTTGGAATAATCCTTTTGTCAATTTGTGAGCAGCTCCCATCAATTTCAGCCATTTCCCCCTCAGATAATATTCCAGTCTTGAAAAGAAGAAATTAAAGCTAAAGGTTCTTTTTTTTTTTTTTTTTTTTTCAATTCGATTCGTATATGCAACCGAATGTCTATGCCGCGAACGAGGTCCGGGCGAACGACGCCGCTCCGTGAATTGGAGCAGGAGAGAATCGAGGGCGCCGGAATCTTCGACGCCATCGAA...

CDS

1 records

下载 CDS FASTA

LOC131006240
ATGTCTATGCCGCGAACGAGGTCCGGGCGAACGACGCCGCTCCGTGAATTGGAGCAGGAGAGAATCGAGGGCGCCGGAATCTTCGACGCCATCGAATGGACCAAAATTGATCAAGTTACGAGTTCGAGGCCTCTTCCGCAGGGAGTGCAGCTGTTATTGCTTGAAGCGGAGTTTGTCATAGTAGAGGGACGTGGCGTTGTTCTTGTGAACACTGATGAGGCAGGAGCTTTATACGTAACAAATTTTCGTCTTCTTTTCTT...

Protein

1 records

下载 Protein FASTA

XP_057789397.1
MSMPRTRSGRTTPLRELEQERIEGAGIFDAIEWTKIDQVTSSRPLPQGVQLLLLEAEFVIVEGRGVVLVNTDEAGALYVTNFRLLFLSEGSTSVIGLGTIPLAAIEKFSKTGMKLPSAPRQIDKNPSQRLLQVIGKDMRIIVFGFRPRTKLRRAVYDALSRWTRPARLWDLYAFAVGSSRYSNRNPKVRLLNEYFRLLGLGSYRASSRTIEDESFTLSNEWWRISNVNSNYTMCPTYPFALLIPNSISDVEIQQACTFRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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