Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005978`

染色体: Chr01 坐标: 75438795-75443242 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005978`
名称	SmilChr01G005978
描述	bark storage protein A-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75438795 - 75443242 / `-`

ID 对照

NCBI Gene ID	`LOC131006268`
GeneID	`131006268`
locus_tag	`-`
NCBI Name	`LOC131006268`
原始查询	`SmilChr01G005978`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bark storage protein A-like
产物	bark storage protein A-like
Arabidopsis	`AT4G24350` (AT4G24350) Phosphorylase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828538] identity=55; qcov=1; evalue=2.56e-88; confidence=high
Rice	`Os06g0112100` - identity=44.2; qcov=0.983; evalue=4.64e-58; confidence=medium
GO	GO:0003824 (catalytic activity); GO:0009116 (nucleoside metabolic process)
KEGG	-
Pfam	PF01048 (PNP_UDP_1)
InterPro	-
eggNOG	-
NR	GeneID:131006268

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057789443.1`
2	Cell wall	细胞壁	0.40000	`XP_057789441.1`
3	Vacuole	液泡	0.40000	`XP_057789441.1`
4	Cytoplasm	细胞质	0.20000	`XP_057789443.1`
5	Nucleus	细胞核	0.00000	`XP_057789443.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75439023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:75439083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B105,B95,D1
`Chr1:75439095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,C3,C73
`Chr1:75439705`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B134,C79,C83
`Chr1:75440876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr1:75440963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,C63,C67
`Chr1:75440970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,C2,D10
`Chr1:75440989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B130,B6,B7
`Chr1:75441573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr1:75441605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,C43
`Chr1:75441680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,C43
`Chr1:75442713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B110,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789441.1

336 aa

168

336

PNP_UDP_1

PF01048 PNP_UDP_1 67-327 aa

XP_057789442.1

336 aa

168

336

PNP_UDP_1

PF01048 PNP_UDP_1 67-327 aa

XP_057789443.1

230 aa

115

230

PNP_UDP_1

PF01048 PNP_UDP_1 3-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789441.1`	Pfam	`PF01048`	PNP_UDP_1	Domain	67	327	1.8e-33	116.6	Phosphorylase superfamily
`XP_057789442.1`	Pfam	`PF01048`	PNP_UDP_1	Domain	67	327	3.4e-33	115.7	Phosphorylase superfamily
`XP_057789443.1`	Pfam	`PF01048`	PNP_UDP_1	Domain	3	221	1.8e-21	77.4	Phosphorylase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933458.1
ACACTTTAAATTACTATAAAAGCAAGCAGATTGCATCTCATCACTCAACTTGCAGCTGTCCCAAATAAAGTAAACAAACTTCCCATTAATTATTCAGACAAAAATATTTCATAATGTCTGCAAATCAGTTAGTTTTAGCAGCCATTTTTGCCTTATTTCTGCTTCCTGCATTTGGATTTGCAAATGGAAGGCAGAAATCATTAGCCATAATCAAGGAGATTAACAAAAATGGGCCATATTTAGGGCTAATCACAGTTTAC...

XM_057933459.1
TTGCATCTCATCACTCAACTTGCAGCTGTCCCAAATAAAGTAAACAAACTTCCCATTAATTATTCAGACAAAAATATTTCATAATGTCTGCAAATCAGTTAGTTTTAGCAGCCATTTTTGCCTTATTTCTGCTTCCTGCATTTGGATTTGCAAATGGAAGGCAGAAATCATTAGCCATAATCAAGGAGATTAACAAAAATGGGCCATATTTAGGGCTAATCACAGTTTACTCTGCTGAGGAAGATGCTTTCTTTGCTACC...

CDS

3 records

下载 CDS FASTA

LOC131006268
ATGTCTGCAAATCAGTTAGTTTTAGCAGCCATTTTTGCCTTATTTCTGCTTCCTGCATTTGGATTTGCAAATGGAAGGCAGAAATCATTAGCCATAATCAAGGAGATTAACAAAAATGGGCCATATTTAGGGCTAATCACAGTTTACTCTGCTGAGGAAGATGCTTTCTTTGCTACCGGTGCCTTCAAAAATGACTCCAGATACCCCTACGTTGACCTCTCAGGGAGGCGATTTCGAGTGGGGAGGATAGAGGGCAAGAA...

Protein

3 records

下载 Protein FASTA

XP_057789441.1
MSANQLVLAAIFALFLLPAFGFANGRQKSLAIIKEINKNGPYLGLITVYSAEEDAFFATGAFKNDSRYPYVDLSGRRFRVGRIEGKKVIYVRCGIGMVNAAAATQQMVDLFDIYGLIHFGVSGNTNTSLSIGDVVVPKEFINTGLWDWMKTNGTVPIEDIAKLDVKDYNLPKRGNNYLGRIAYRSERYYSEAGEPNVPQEKVWFEVTTNWLQLATSLQGIELERCVNSTLCLETKPKVVVGVRGSTANMFVNNGDYRDFL...

XP_057789442.1
MSANQLVLAAIFALFLLPAFGFANGRQKSLAIIKEINKNGPYLGLITVYSAEEDAFFATGAFKNDSRYPYVDLSGKRFRVGRIEGKKVIYVRCGIGMVNAAAATQQMVDLFDIYGLIHFGVSGNTNTSLSIGDVVVPKEFINTGLWDWMKTNGTVPIEDIAKLDVKDYNLPKRGNNYLGRIAYRSERYYSEAGEPNVPQEKVWFEVTTNWLQLATSLQGIELERCVNSTLCLETKPKVVVGVRGSTANMFVNNGDYRDFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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