当前解析结果
SmilChr01G005985| 统一新 Gene ID | SmilChr01G005985 |
|---|---|
| 名称 | SmilChr01G005985 |
| 描述 | receptor-like protein 6 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75482810 - 75484268 / - |
| NCBI Gene ID | LOC131013573 |
|---|---|
| GeneID | 131013573 |
| locus_tag | - |
| NCBI Name | LOC131013573 |
| 原始查询 | SmilChr01G005985 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 6 |
| 产物 | receptor-like protein 6 |
| Arabidopsis | AT3G11010 (RLP34)receptor like protein 34 [Source:NCBI gene (formerly Entrezgene);Acc:820272] identity=30.2; qcov=1.08; evalue=2.32e-46; confidence=low |
| Rice | Os01g0163000- identity=32.3; qcov=1.19; evalue=8.03e-61; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013573 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797683.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797683.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797683.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797683.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797683.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75482907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr1:75483090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr1:75483093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B106,B73,D8 |
Chr1:75483350 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | A5,B67,C75 |
Chr1:75483350 |
TG |
T |
1bp_deletion | CDS_variant | 3 | A5,B67,C75 |
Chr1:75483396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B115,B20 |
Chr1:75483468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B27,B91,C38,C44 |
Chr1:75483469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C34,C65 |
Chr1:75483509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:75483652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:75483717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr1:75483767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797683.1PF08263
LRRNT_2 29-70 aa
PF00560
LRR_1 100-123 aa
PF00560
LRR_1 210-232 aa
PF00560
LRR_1 258-280 aa
PF00560
LRR_1 307-328 aa
PF00560
LRR_1 356-368 aa
PF00560
LRR_1 409-425 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797683.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 29 | 70 | 1e-08 | 36.0 | Leucine rich repeat N-terminal domain |
XP_057797683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 123 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057797683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 210 | 232 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057797683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 258 | 280 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057797683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 307 | 328 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057797683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 356 | 368 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057797683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 409 | 425 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。